Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02499 ATGCAAGTCTTGGAAGATCAAGTCATGATGGTTTCCAAGGATCATACACAACAAATCATAAAAGGAAAACGAACAAAGCGTCAAAGGCTACCATCTCCACTTAGGTTAACTATGCCGGTTTCGAATTCTTGCAATGAAGGTACAAGTTACAATAATAATGATAACAACAACAATTCAGGAGGAATTGAGTTTGTTAAAATTGATTCGCGTGACCGATCAGAAGAAGAAAAAGAAGAAGAAGATTTGGCAAATTGTCTCATTCTATTAGCTCAAGGTCATAATCATCGTCATGATCATCAAAACACACATGTGTCGAATCATCGCGATCACGATAACAACAAATCTTCAAATTTTTATCTTTACGAATGCAAGACTTGCAATCGTTGCTTTCCTTCATTCCAAGCACTTGGTGGACATAGAGCAAGTCATACCAAACCTAACAAGGCAAATTGTAATGTTACACAACAAAAGCAAGCAGTTACAACATCTTCTTTTGTTGATGATCATTATGATCCAACCATGAATACCATACTCTCTTTGCAAGCCTTCGCGGCGACCCCTATTACTACTATTACTACTACAAAAAAATCAAAAGTTCATGAGTGTTCGATATGTGGTGCCGAATTCTCATCGGGACAAGCGTTAGGGGGACATATGCGGAGACATAGGAATCTTGTGAACACGTCTACAACGACGACGACAACAACAACAACTTCTATGAGTTTGAGTATTGGTAGTCCTAAATCTCATGAAGCAAAGAAACCTAGGAATGGTTTTAAGTTGGATTTGAATCTTCCAGCTCCAGAAGTTGATCAAAAAGATCAATCCAAGTTTTCGTTTCAGCCTAGAGAAAATGTTATTGCTTTCTCTAATTCTTCTTTGGTGGATTGCCATTACTAA 900 0.3767 MQVLEDQVMMVSKDHTQQIIKGKRTKRQRLPSPLRLTMPVSNSCNEGTSYNNNDNNNNSGGIEFVKIDSRDRSEEEKEEEDLANCLILLAQGHNHRHDHQNTHVSNHRDHDNNKSSNFYLYECKTCNRCFPSFQALGGHRASHTKPNKANCNVTQQKQAVTTSSFVDDHYDPTMNTILSLQAFAATPITTITTTKKSKVHECSICGAEFSSGQALGGHMRRHRNLVNTSTTTTTTTTTSMSLSIGSPKSHEAKKPRNGFKLDLNLPAPEVDQKDQSKFSFQPRENVIAFSNSSLVDCHY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02499 299 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Mepo4g02499 299 SMART c2h2final6 121 143 IPR013087 -
Mepo4g02499 299 SMART c2h2final6 200 222 IPR013087 -
Mepo4g02499 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Mepo4g02499 299 MobiDBLite consensus disorder prediction 228 246 - -
Mepo4g02499 299 SUPERFAMILY beta-beta-alpha zinc fingers 197 224 IPR036236 -
Mepo4g02499 299 MobiDBLite consensus disorder prediction 35 62 - -
Mepo4g02499 299 MobiDBLite consensus disorder prediction 228 256 - -
Mepo4g02499 299 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Mepo4g02499 299 SUPERFAMILY beta-beta-alpha zinc fingers 120 151 IPR036236 -
Mepo4g02499 299 PANTHER ZINC FINGER PROTEIN ZAT5 71 280 - -
Mepo4g02499 299 Gene3D Classic Zinc Finger 182 255 - -
Mepo4g02499 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 222 IPR013087 -
Mepo4g02499 299 Pfam C2H2-type zinc finger 121 145 - -
Mepo4g02499 299 Pfam C2H2-type zinc finger 199 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02499 Mepo-Chr4 33371886 33372948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02499 8 299 C2H2 Transcription Factor Family AT5G03510 40.129 1.17e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g02499 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02499 - - tpra:123884313 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02499 4 33371886 33372948 Mepo2g01795 2 26394455 26395635 ECH
Mepo4g02499 4 33371886 33372948 Mepo4g02499 4 33371886 33372948 ECH
Mepo4g02499 4 33371886 33372948 Mepo6g03334 6 45290652 45291718 ECH