Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02476 ATGTATGAGTGTGAGTTGTGCGGCAAAAGGTTCAACTCCAGCAACGCACTTGGTGGCCACAAAACATCTCACCGCTCACAACCTCAAAACAAGAAACAAAGACACAATCATGCTGTCAATAAGGATGATGAAGATGATGAGAAACATAAACATAGTTGTCATGTTTGCAACAAGGTTTTTTCATCCAAGCAGGCTTTGTGTGGACACATGAGATGTCACAAAAGAGATGGGAAGGTTATTCACCCGCCAACTTCATCATCTATTGACTTATCAAAATATTTGATACCAATATCGTATCAGACCAATAAAGGTAGCAAGAGGAATACTGGTGTCAATATCATTGATGAAGATGTTGCTCGAACACTCATGTAA 372 0.3952 MYECELCGKRFNSSNALGGHKTSHRSQPQNKKQRHNHAVNKDDEDDEKHKHSCHVCNKVFSSKQALCGHMRCHKRDGKVIHPPTSSSIDLSKYLIPISYQTNKGSKRNTGVNIIDEDVARTLM 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02476 123 SMART c2h2final6 51 73 IPR013087 -
Mepo4g02476 123 SMART c2h2final6 2 24 IPR013087 -
Mepo4g02476 123 MobiDBLite consensus disorder prediction 35 50 - -
Mepo4g02476 123 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 2 88 IPR044653 GO:0003700
Mepo4g02476 123 MobiDBLite consensus disorder prediction 12 50 - -
Mepo4g02476 123 FunFam Zinc finger protein 236 1 25 - -
Mepo4g02476 123 ProSitePatterns Zinc finger C2H2 type domain signature. 4 24 IPR013087 -
Mepo4g02476 123 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Mepo4g02476 123 ProSiteProfiles Zinc finger C2H2 type domain profile. 2 29 IPR013087 -
Mepo4g02476 123 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Mepo4g02476 123 Gene3D Classic Zinc Finger 1 73 - -
Mepo4g02476 123 SUPERFAMILY beta-beta-alpha zinc fingers 2 73 IPR036236 -
Mepo4g02476 123 Pfam C2H2-type zinc finger 2 27 - -
Mepo4g02476 123 Pfam C2H2-type zinc finger 51 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02476 Mepo-Chr4 32992583 32992954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02476 2 82 C2H2 Transcription Factor Family AT2G37430 38.272 7.38e-13 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g02476 zf-C2H2_6 3.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02476 - - mtr:25489007 99.7525