Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02467 ATGTCAGAACCTTCCACCACCACTCCTCCACCGCCATCCAAAAGCTGGGCCGATCAAGCCGATGAAGAAACCAATCAAACCTCCACCTCCGCCGCCGACGAAACCCCTTCCCTCAACGTCAATGATTTAACCATCGACGAAGAAAACAAATCCCCTTCTAAATCTCTAGACGATCCCGACGACTCTAACATTACAGCGGTTACAGCTGGAGACACTCCCTACACATCTGCCGCGACGTTCGAAGAATTATCTCTCTCACCGGAGCTATTGAAGGGATTATATGTGGAGATGAAGTTCGAAAAACCTAGCAAAATTCAAGCTAAGAGTTTGCCCATGATTCTTAATCCTCCACATAGGGATTTGATTGCTCAAGCGCATAATGGTTCTGGAAAAACTACTTGTTTTAATCTTGGGATGCTTAGTAGGGTTGATCCCAATTTGCAAGCTCCTCAAGCTCTTTGCATCTGTCCTACTAGAGAGTTGGCTATTCAGAATGTTGAGGTTCTCCGTAAGATGGGGAAGTACACGGGGATTAGCTCAGAATGTGCAGTTCCTATGGACAGAAGGGATTCAATTCCGTTAGCAAAAAGGGCGCCTATTATGGCTCAAGTTGTTATTGGTACTCCTGGCACTATTAAGAATTTGATTACTTATAAGAAACTTGGAGTGACAAAATTGAAGATTCTCGTTTTTGATGAGGCGGATCAAATGCTTGCTGAGGATGGATTTAGAGATGATTCTCTCAGGATAATGAGAGAAATAGAAAAATTCAATTCAAGCTGTCAGGTTCTTCTATTTTCTGCTACATTTAATGACACTGTCAAGAATTTCGCTACAAGGGTTGTTGGTAAGAAGGAGCATAATGAACTTTTTGTGAAGAAAGAGGAGCTATCTTTAGATGCAGTAAAACAGTACAAAGTTCTTGTTCCTGATGAGCTTGCTAAGATTGACGTGATTAAAAATTATATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTGCGCACTAGAAATAGTGCCAAAATGTTGCACAAAGCTCTTGTTGATTTAGGCTATGAGGTCACTTCCATACAAGGTGCTCTTGACCATGTTGATAGAGACAAGATCGTCAAAGAGTTCAAAGATGGTTTGACTCAGGTTCTTATATCGACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTTAATTTGGTTATAAACTATGATCTTCCACTGAAGTACGCTGCTGAGTACACCCGTGGCCATGAACAAGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCCGGACGATTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGATGAAAGGGATGAAAAGACCTTGTCAAAGATTGAAAAACATTTTGGCACCTATATAAAAGAGGTGAAAGACAGAAGTGTTGAAGATTATAAAGTTGCTCTTAAAGAAGCTGGTTTACTGTTTTGA 1473 0.4148 MSEPSTTTPPPPSKSWADQADEETNQTSTSAADETPSLNVNDLTIDEENKSPSKSLDDPDDSNITAVTAGDTPYTSAATFEELSLSPELLKGLYVEMKFEKPSKIQAKSLPMILNPPHRDLIAQAHNGSGKTTCFNLGMLSRVDPNLQAPQALCICPTRELAIQNVEVLRKMGKYTGISSECAVPMDRRDSIPLAKRAPIMAQVVIGTPGTIKNLITYKKLGVTKLKILVFDEADQMLAEDGFRDDSLRIMREIEKFNSSCQVLLFSATFNDTVKNFATRVVGKKEHNELFVKKEELSLDAVKQYKVLVPDELAKIDVIKNYIFEIGENVGQTIIFVRTRNSAKMLHKALVDLGYEVTSIQGALDHVDRDKIVKEFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPLKYAAEYTRGHEQEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDEKTLSKIEKHFGTYIKEVKDRSVEDYKVALKEAGLLF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02467 490 CDD SF2_C_DEAD 302 448 - -
Mepo4g02467 490 Pfam DEAD/DEAH box helicase 104 276 IPR011545 GO:0003676|GO:0005524
Mepo4g02467 490 Gene3D - 59 296 IPR027417 -
Mepo4g02467 490 CDD DEADc_DDX19_DDX25 85 282 - -
Mepo4g02467 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 454 IPR027417 -
Mepo4g02467 490 SMART helicmild6 344 439 IPR001650 -
Mepo4g02467 490 SMART ultradead3 98 305 IPR014001 -
Mepo4g02467 490 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 480 IPR001650 -
Mepo4g02467 490 MobiDBLite consensus disorder prediction 1 70 - -
Mepo4g02467 490 MobiDBLite consensus disorder prediction 12 46 - -
Mepo4g02467 490 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 107 IPR014014 GO:0003724
Mepo4g02467 490 Gene3D - 297 480 IPR027417 -
Mepo4g02467 490 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 42 457 - -
Mepo4g02467 490 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 288 IPR014001 -
Mepo4g02467 490 Pfam Helicase conserved C-terminal domain 315 439 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02467 Mepo-Chr4 32869795 32879917 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02467 79 471 Eukaryotic Initiation Factors Gene Family AT1G72730 35.787 8.55e-69 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02467 K18655 - gmx:100784739 736.102