Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02466 ATGTCAGAACCTTCCACCACCACTCCTCCACCGCCATCCAAAAGCTGGGCCGATCAAGCCGATGAAGAAACCAATCAAACCTCCACCTCCGCCGCCGACGAAACCCCTTCCCTCAACGTCAATGATTTAACCATCGACGAAGAAAACAAATCCCCTTCTAAATCTCTAGACGATCCCGACGACTCTAACATTACAGCGGTTCGTCCTGGAGACACTCCCTACACATCCGCCGCGACATTCGAAGAATTATCTCTCTCGCCGGAGCTATTGAAGGGATTATATGTGGAGATGAAGTTCGAAAAACCTAGCAAAATTCAAGCTAAGAGTTTGCCCATGATTCTTAATCCTCCACATAGGGATTTGATTGCTCAAGCGCATAATGGTTCTGGAAAAACTACTTGTTTTAATCTTGGGATGCTTAGTAGGGTTGATCCCAATTTGCAAGCTCCTCAAGCTCTTTGCATCTGTCCTACTAGAGAGTTGGCTATTCAGAATGTTGAGGTTCTCCGTAAGATGGGGAAGTACACGGGGATTAGCTCAGAATGTGCAGTTCCTATGGACAGAAGGGATTCAATTCCGTTAGCAAAAAGGGCGCCTATTATGGCTCAAGTTGTTATTGGTACTCCTGACACTATTAAGAATTTGATTACTTATAAGAAACTTGGAGTGACAAAATTGAAGATTCTCGTTTTTGATGAGGCGGATCAAATGCTTGCTGAGGATGGATTTAGAGATGATTCTCTGAGGATAATGAGAGAAATAGAAAAATTCAATTCAAGCTGTCAGGATTTGTCGTTCATTCCTCAATGTCCCGACAAGAATGAACGACAAATCTTGTGGGCTCTTAGAAACCAACCGGCAGTGATTGAGATTAATATTGACTTGAAGTTTAAGACTTACGAGGGTGGCGTTCATATACGATCATGTGCTGGTGGTGTAGAAGGGCATGCCGTCACATTAGTTGGCTATAATCTTAAAGATAAATACTGGATCGTGAAGAATTCATGGGGTGAAAACTGGGGAGAATCGGGTTATATGAAATTAATGATGGGAATCGGTGGTTCGTGTGAACTTACTTATGGATTATACCCCATTGTGTGCATCATGAGTGCTTCAGGTGGTGGAACATCGGCGCATGAATGGATCATCTCATCTAAAGTTAAATCTGAGTATTCATTCAAGGCTTGGGTGTAA 1194 0.4305 MSEPSTTTPPPPSKSWADQADEETNQTSTSAADETPSLNVNDLTIDEENKSPSKSLDDPDDSNITAVRPGDTPYTSAATFEELSLSPELLKGLYVEMKFEKPSKIQAKSLPMILNPPHRDLIAQAHNGSGKTTCFNLGMLSRVDPNLQAPQALCICPTRELAIQNVEVLRKMGKYTGISSECAVPMDRRDSIPLAKRAPIMAQVVIGTPDTIKNLITYKKLGVTKLKILVFDEADQMLAEDGFRDDSLRIMREIEKFNSSCQDLSFIPQCPDKNERQILWALRNQPAVIEINIDLKFKTYEGGVHIRSCAGGVEGHAVTLVGYNLKDKYWIVKNSWGENWGESGYMKLMMGIGGSCELTYGLYPIVCIMSASGGGTSAHEWIISSKVKSEYSFKAWV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02466 397 MobiDBLite consensus disorder prediction 1 74 - -
Mepo4g02466 397 Gene3D - 60 292 IPR027417 -
Mepo4g02466 397 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 329 348 IPR025661 -
Mepo4g02466 397 Pfam Papain family cysteine protease 268 359 IPR000668 GO:0006508|GO:0008234
Mepo4g02466 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 257 IPR027417 -
Mepo4g02466 397 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 288 IPR014001 -
Mepo4g02466 397 MobiDBLite consensus disorder prediction 12 46 - -
Mepo4g02466 397 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 107 IPR014014 GO:0003724
Mepo4g02466 397 PANTHER RNA HELICASE 30 268 - -
Mepo4g02466 397 CDD DEADc_DDX19_DDX25 85 266 - -
Mepo4g02466 397 Gene3D Cysteine proteinases. Chain C 313 363 - -
Mepo4g02466 397 SMART pept_c1 208 365 IPR000668 GO:0006508|GO:0008234
Mepo4g02466 397 Pfam DEAD/DEAH box helicase 104 259 IPR011545 GO:0003676|GO:0005524
Mepo4g02466 397 SUPERFAMILY Cysteine proteinases 262 365 IPR038765 -
Mepo4g02466 397 SMART ultradead3 98 301 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02466 Mepo-Chr4 32850583 32856918 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02466 79 245 Eukaryotic Initiation Factors Gene Family AT1G72730 37.500 3.68e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02466 K18655 - gmx:100778091 392.504