Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02463 ATGACGGATTCCGAGAAAGACGCGGTGCCAGCTTCACCGGCGGCGACACTTTACGTCGGCGATCTTCACTCCGACGTAACCGATTCTCAACTCTACAAGGCCTTTTCTGAATTCAACACTCTCATTTCCGCTCGCGTCTGTAAAGACTCTGCCACCAGGAAATCACTCTGTTACGGTTACGTCAACCTCTCCTCTCATCAAGAAGCAATTCGTGCAATCGAGTTGAAGAATCATTCTTCCCTCAATGGAAAAGTGATAAGGGTCATGTGGTTAAGTCGTGATGCTGATGCAAGGAAGAGTGGCAAAGGGAATGTGTTTGTTAAGAACTTGGCAGAATCCATAGATAATGTGGGACTACATGATTTATTTCAAAAATATGGGAACATTTTGTCCAGCAAAATTGCCATGTCTGAGGATGGGAAGAGCAAAGGGTTTGGTTATATCCAGTTTGATTCAGAGGAGTCTGCAAATGTTGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGCAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTCTTCCTGACCTGGATGCCAAATTTACAAACTTGTACGTTAAGAATTTGGACCCAGATGTTACTGAAAAACATCTTCAAGAAAAGTTCTCCTCTTTTGGAAGAATTGTTAGCTTGGCGATTAAAAAGGATGAGAATGGGCAGTCAAAAGGCTTCGGATTTGTTAACTATGAGAGCCCAGATGATGCTAGACGAGCAATGGAAGCAATGGATGGATCACAGTTTGGAGGTTCAAAGATCTTGTATGTTGCAAGAGCACAAAAAAAGGTTGAACGTGAGCAGATATTGCATCATTTGTTTGTGGAAAAAGGCTTGAAACACAAGGGATCAAACATTTATGTGAAGAACATTGATACCAGTGTTGGTGATGAAGAACTACGGGACCATTTTAGTGCATGTGGCAAAGTCTTGTCTGCAAAAGTTATGCGAGATGACAAAGGGGCAAGCAAGGGGTTTGGTTTTGTCTGTTTTTCTACCGTGATGGAGGCCTGCAAGTCTATGAGCTGTTTTAATGGGTGCATGTTCCATGGCAAACCACTGTATGTTGCTTTTGCTCAGAAGAAAGAGGATAGGGAAAGAGAATTGCAGATCAGGCATGCTCAGAAGAAACTAGAAGGATTAGCTGGACCTTTTTCTACTGCTGGTGCATGTCCTCCTCCTTTCATCCACAGAGCTTCTGGTGTTGTTTATCACCCTCCTCTGGGATCAGGATGGAGTGCTAATGGCTTTGCATCACCTTCTATTATTTCCAACTTGGGTAAGCCGCACATGATAATCCTGGGTGGGACAAAAGATAATACAAATTCAAAAGAGTCGATTACTCACTCAGGACAGGCCAAGAACGTGGCCAGTGGATGGCAGCAGGAGATGCAAGAAAATTCTGGAATTTCATCTGCTATGCAGGCTCATGATCTTCAGAAGACCAAAGTTTCTGGCCAGGACGTGCTTCATTCAAATTCTGCTTCAGCTGGGGTTGCTGTCATTTGA 1539 0.4334 MTDSEKDAVPASPAATLYVGDLHSDVTDSQLYKAFSEFNTLISARVCKDSATRKSLCYGYVNLSSHQEAIRAIELKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAESIDNVGLHDLFQKYGNILSSKIAMSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPDVTEKHLQEKFSSFGRIVSLAIKKDENGQSKGFGFVNYESPDDARRAMEAMDGSQFGGSKILYVARAQKKVEREQILHHLFVEKGLKHKGSNIYVKNIDTSVGDEELRDHFSACGKVLSAKVMRDDKGASKGFGFVCFSTVMEACKSMSCFNGCMFHGKPLYVAFAQKKEDRERELQIRHAQKKLEGLAGPFSTAGACPPPFIHRASGVVYHPPLGSGWSANGFASPSIISNLGKPHMIILGGTKDNTNSKESITHSGQAKNVASGWQQEMQENSGISSAMQAHDLQKTKVSGQDVLHSNSASAGVAVI 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02463 512 SMART rrm1_1 295 367 IPR000504 GO:0003723
Mepo4g02463 512 SMART rrm1_1 195 268 IPR000504 GO:0003723
Mepo4g02463 512 SMART rrm1_1 16 89 IPR000504 GO:0003723
Mepo4g02463 512 SMART rrm1_1 104 176 IPR000504 GO:0003723
Mepo4g02463 512 SUPERFAMILY RNA-binding domain, RBD 291 382 IPR035979 GO:0003676
Mepo4g02463 512 Gene3D - 2 103 IPR012677 -
Mepo4g02463 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 93 IPR000504 GO:0003723
Mepo4g02463 512 SUPERFAMILY RNA-binding domain, RBD 14 183 IPR035979 GO:0003676
Mepo4g02463 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Mepo4g02463 512 FunFam Polyadenylate-binding protein 97 184 - -
Mepo4g02463 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 87 IPR000504 GO:0003723
Mepo4g02463 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 264 IPR000504 GO:0003723
Mepo4g02463 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Mepo4g02463 512 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 173 IPR000504 GO:0003723
Mepo4g02463 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 180 IPR000504 GO:0003723
Mepo4g02463 512 FunFam Polyadenylate-binding protein 185 280 - -
Mepo4g02463 512 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 15 390 IPR006515 GO:0003723
Mepo4g02463 512 SUPERFAMILY RNA-binding domain, RBD 187 277 IPR035979 GO:0003676
Mepo4g02463 512 SMART rrm2_1 104 176 IPR003954 GO:0003676
Mepo4g02463 512 SMART rrm2_1 295 367 IPR003954 GO:0003676
Mepo4g02463 512 SMART rrm2_1 195 267 IPR003954 GO:0003676
Mepo4g02463 512 Gene3D - 104 184 IPR012677 -
Mepo4g02463 512 MobiDBLite consensus disorder prediction 447 471 - -
Mepo4g02463 512 PANTHER RNA BINDING PROTEIN 294 420 - -
Mepo4g02463 512 Gene3D - 185 281 IPR012677 -
Mepo4g02463 512 Gene3D - 286 385 IPR012677 -
Mepo4g02463 512 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02463 Mepo-Chr4 32836693 32840313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02463 103 389 Eukaryotic Initiation Factors Gene Family AT2G36660 32.526 6.17e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02463 K13126 - gmx:100779547 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02463 4 32836693 32840313 Mepo4g02463 4 32836693 32840313 ECH
Mepo3g03413 3 44157655 44161949 Mepo4g02463 4 32836693 32840313 PCT