Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02427 ATGGAGAATTCACGAAGACCGTTTGATAGATCAAAAGAACCAATTTTGAAGAGACCCAGATTGATCAAAGATCCGGATCATGCTCCGAATTCGAGTGCTCGACCAATTCAACAAAGAAAACAATTGAATTCTGGGATTTCAACGTTGTCTTCTGCTTCGCGGTTCAGACAGAATGATAGAGAGTTAGAAAGCAGTGATTTTGGTGGTGGTTATGAGCCGCAGCCGATTCGGTTTGAGGACCTGGTGGCTCAGTATAAGAGTGCACTTGCAGAGCTTACTTTCAATTCCAAACCGATGATTACCAACTTGACTATAATTGCAGGGGAGAATCAAGCTGGTCAGAAGGCTATTGCTGCTACTATTTGTGCTAACATTCTAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGCCAAACTACCCGAGGTATTCTGCAAGGCATACAAACAGGTAGATCCTTCTGTCCGTCAAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGGTTATTGACAAGGAACTGGGATTCACTCCAGCAATCAATGGTTCGTCTTCAGCATCTACTGCACTCAGGAGTGATTCACAGTCACAGAATTCGCCTCACAGTATCCATGTGAATCCCAAGTATTTTGAAAGACAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTTGTTGGTGACATGAGTGGAGCTATTGCAAACTCAAATGACGACCATGAGATGACTGATAGAGATTTGGGTGTTGCACAAGCATGGAATAATCAGCGCACTCATAGAGATCCATTCGATGATTCAGTTCCAGAAAAGAGCATCAGTGCATCCTATGAAGACAATGAACATGGTTCCAATCTTTCAAGGAATTTGGGCACGGGTATTGGAAGAACTGATGGCAGGGTGGCCAAGTTAGGACACATAAATTTGTACAGCAAAGCTGCTGCTGGTGTTTCAGGGACCATATCTGGGCCAAGAAATAGTGTTGGCCTCAAGCATAGTTTTTCAAATACTGAAGCATCTATGCATCAGCCAATACGAAACATAACTGGCATAAAGAGAAATGTGATATCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACTCGTGGGATGAAATGAACACAGGATTGACTGGTCATGGTGTCCGTAACAACTTGGGCAATGATGCTTGGACCGCTGATGATGAGAATTTGGAAGCTGAAGATAACCACCACCAAATCAGAAATGTTTTTGGGGCAAATTTTGATAGAGAAATGTCCAATAGATCTCAAACCACTGAAAAGAAACAATTAAATGCATTTCAGCATCATCCATCATTATCATGGCAATTGCAGGAGCAGCAATCAATTGATGAGTTGGATAGGAAACCAGGTCACTTGGATGGATCTATGTTAATGTCTGGTTCCTTACCAGCCAATGCAAGTTCTTCTGCTGCCAGGATGGGGAATCGTGCTTTCCTTCCAAATGCAAGAATAGGATTGGCAGAAATTGAGGGACAACAATTTCATTCTGAGGGATTTGAATCCCCTTCTAGGCAGTCACCTTTGCGAAATCGGTCTCCAACGCCACCAAGTATTGACCATTCCCTTCTTATGAAAAGTTTGGCTATGCAAGACCATCCCCACTCTCGTAAAACATCTCATTTTTTGGGAGGTCTGCACAGCCAATATAATAAAGATTCTTCACCCACCCTTTCTCCTAATATTCATGTTGGAGACTTGCGAAGATCATCGCAACTAAAAGACTTGCAGGTTCCATTACCTTCAGCGGGTTTTCAGCCAAGGTATCAGCAACAACTGAGCTCTTCACACGCTGAAGTAACTGTTAAGATTGAGAAGCCACCTCTGTCCAAAGTTTCTCTAGCCAGAAAAACCTCAGAGCAGCCAGCCACAAGTCATACAAAAGCTGCAATTGTGAAGAAAGGAACATTTTCCAACATGCCAACTACTAGTAGTCTTCCATCTCTATTAGGGGCTCGGCCTTCTCAGTCAGGTGGTTCTTCCTCTGCCAAAATAATTTCATCAGTGTCCGCAAATGTCTCTCCATCTTCACCTGCTTTGCCGATAAGACCTCAAAGAAAGGCTGGACAACCACTAAGGACATCTACTCTATCACCAGCTTCCTCGAATGTTAGCAGTGCCTCAGCCCAGTCATCGGGTGCCACCAATCATACCTCAAATCCACTTGCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCCACAGTTACTGAGACACCAGCCGAGGTGCCGCCTGAGATGCTGACTCGATTGGAAGATCACTGCGACAGCTTTAGTACCAGTAGCTCTATGCCTGTTGCCTCATTGTCTGGTTCTGCAGCTGTCCCTCTCCCTTCTACCAAAGATGAGTTAGATGATACTGCGAAAACACCTATGTCGTTATCTGAATCAACCAGCACAGATATTATAAATGTCATTGGTTTTGAGTTTAAGCCTAATGTAATCAGAAAGTTGCATCCATCTGTAATCAGTGGATTATTTGATGATTTCCCACATCATTGCAGCATTTGTGGCCTTAAACTTAAATTCCAAGAACAGTTTAACAGACACTTGGAGTGGCATGCCACAAGAGAAAGAGAACGCACTGGTTTAATTACGGCATCAAGATGGTATCTGAAGTCAAGTGACTGGGTTGCTGGCAAAGCTGAATGTGCATCTGAGAATGAGTTTACTGATTCTGTAGATTCACAAGACAGCGAAACAGACAAAAATCAAGAGGATGCAATGGTTCTAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGTGGTGAGCTATTTGAAGATGTTTACTGTCATGAAAATAGTGAATGGATGTTCAAAGGGGCTGTTTACGTGACTAACGCCAATATCGATACTGAGACGGGAGTCAAAAATGTGATGTCTGGAAGGGGTCCCATCATTCATACAGGATGCCTATCAGATAACTCATTATCGAGTGTCCTCAAGACGGTAAGGTTTTATTTCATGTAA 3072 0.429 MENSRRPFDRSKEPILKRPRLIKDPDHAPNSSARPIQQRKQLNSGISTLSSASRFRQNDRELESSDFGGGYEPQPIRFEDLVAQYKSALAELTFNSKPMITNLTIIAGENQAGQKAIAATICANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYKQVDPSVRQSMKHLFGTWKGVFPPQTLQVIDKELGFTPAINGSSSASTALRSDSQSQNSPHSIHVNPKYFERQRLQQSSRTKGVVGDMSGAIANSNDDHEMTDRDLGVAQAWNNQRTHRDPFDDSVPEKSISASYEDNEHGSNLSRNLGTGIGRTDGRVAKLGHINLYSKAAAGVSGTISGPRNSVGLKHSFSNTEASMHQPIRNITGIKRNVISSSWKNSEEEEYSWDEMNTGLTGHGVRNNLGNDAWTADDENLEAEDNHHQIRNVFGANFDREMSNRSQTTEKKQLNAFQHHPSLSWQLQEQQSIDELDRKPGHLDGSMLMSGSLPANASSSAARMGNRAFLPNARIGLAEIEGQQFHSEGFESPSRQSPLRNRSPTPPSIDHSLLMKSLAMQDHPHSRKTSHFLGGLHSQYNKDSSPTLSPNIHVGDLRRSSQLKDLQVPLPSAGFQPRYQQQLSSSHAEVTVKIEKPPLSKVSLARKTSEQPATSHTKAAIVKKGTFSNMPTTSSLPSLLGARPSQSGGSSSAKIISSVSANVSPSSPALPIRPQRKAGQPLRTSTLSPASSNVSSASAQSSGATNHTSNPLANLLSSLVAKGLISTVTETPAEVPPEMLTRLEDHCDSFSTSSSMPVASLSGSAAVPLPSTKDELDDTAKTPMSLSESTSTDIINVIGFEFKPNVIRKLHPSVISGLFDDFPHHCSICGLKLKFQEQFNRHLEWHATRERERTGLITASRWYLKSSDWVAGKAECASENEFTDSVDSQDSETDKNQEDAMVLADENQCLCVLCGELFEDVYCHENSEWMFKGAVYVTNANIDTETGVKNVMSGRGPIIHTGCLSDNSLSSVLKTVRFYFM 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 668 711 - -
Mepo4g02427 1023 FunFam polyadenylation and cleavage factor homolog 4 74 202 - -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 1 27 - -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 212 267 - -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 803 827 - -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 645 751 - -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 1 71 - -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 31 55 - -
Mepo4g02427 1023 SMART 558neu5 80 202 IPR006569 -
Mepo4g02427 1023 ProSitePatterns Zinc finger C2H2 type domain signature. 868 888 IPR013087 -
Mepo4g02427 1023 Gene3D - 75 202 IPR008942 -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 574 595 - -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 528 595 - -
Mepo4g02427 1023 Pfam CID domain 86 195 IPR006569 -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 721 751 - -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 212 231 - -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 529 552 - -
Mepo4g02427 1023 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Mepo4g02427 1023 CDD CID_Pcf11 82 198 IPR047415 -
Mepo4g02427 1023 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 53 1012 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Mepo4g02427 1023 SUPERFAMILY ENTH/VHS domain 80 201 IPR008942 -
Mepo4g02427 1023 MobiDBLite consensus disorder prediction 281 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02427 Mepo-Chr4 32443007 32449412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02427 54 402 C2H2 Transcription Factor Family AT4G04885 39.601 6.87e-61 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g02427 CID 1.4e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02427 K14400 - gmx:100807857 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02427 4 32443007 32449412 Mepo4g02427 4 32443007 32449412 ECH
Mepo3g03451 3 44451746 44458312 Mepo4g02427 4 32443007 32449412 PCT