Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02421 ATGGATGACCACCATAACAATCATGGTCATCACCATCACCATCAACATCAACAACAACAATATGATCTAAGACAACTAGTAAATGGAACAAGGTCAACCCATTTCCCATCTATACCGACGGCGGCTACGGATGAGTTTTTCTCCGGTCACCGGAATCTGACAGCTTTGTTAACTACTACTCATCCTAATCCACAGACACATCAAAACCAACATCAACAACAGTATGAGATGATGATGTTAGGTCGTGGAGTAGTTCTTGAAGATTTCAATAGTATCACTACTCATGTACCACCACCTTCAACAACAATAACAACAGCAACCACCACTGCTAGTGCTAGTGTTTCAACTCCTGAAACCACAGGTTATATGGGTGGAGATGCATCCACCGGAAGATGGCCAAGACAAGAAACTCTTACTCTTCTTGAAATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAAGGTCCTTTATGGGATGAAGTTTCTAGGATAATGTCTGAAGAACATGGATATCAAAGGAGTGGAAAAAAGTGCAGAGAAAAATTTGAGAATCTGTACAAATATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGGCATGATGGCAAGCATTACAGGTTCTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTCTACCAGAAACCAATTTTGTCAACAACAATAATTTCCATTTCCAACAAACAAGTAATAGCCAAAACCCTCACAATGATCATAGCCTCAGTCTCACTACTAACTCAACTGACTTTGAAATCGATACGTCGTCATCTGATGATGGTAATGATGTGAAGGGAAAGAGGAAGAGTAGTGGAAGAAGAAGTTGGAAGGTGAAGATAAAAGACTTCATTGATGCACAAATGAAGAAGCTTGTGGAGAAGCAAGAGGAGTGGTTGAGTAAGCTTGTGAAGACACTTGAGGACAAGGAAAAGGAGAGGGCGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGCCAAAAGGGTGGAAAAAGAACAAAAGTTTTGGAGTAATGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATTTAGGAGGTAGAGAAATGAGTAAGGTTGAAGAAGCTCATGATCATAAGGGTGTAAATGTAATAAATGGAGCAGAGATTCAAAATCAAAATGAAGATGGGAGTGAAATCTTGAATAGTACTGTGAGAGGTTCTGATAATTGTCCAAGGGATGATTCTAAAGAAGGAAACAGGAAGAGAAAAGAGAGTTTTTACTTCAACAATAATGAACAATGTTCTATGTACAATCAAGGAAGTGGTTATTGTGATGTTAATGATCAAAGAGAGGAGATTGTGAAACTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATATTGTTGCTAATGGTGATACTTGCTTTCCTTTCATGATTAGTGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAGATCAATAAAGTAAACCAAAACCATTAA 1536 0.3835 MDDHHNNHGHHHHHQHQQQQYDLRQLVNGTRSTHFPSIPTAATDEFFSGHRNLTALLTTTHPNPQTHQNQHQQQYEMMMLGRGVVLEDFNSITTHVPPPSTTITTATTTASASVSTPETTGYMGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSLPETNFVNNNNFHFQQTSNSQNPHNDHSLSLTTNSTDFEIDTSSSDDGNDVKGKRKSSGRRSWKVKIKDFIDAQMKKLVEKQEEWLSKLVKTLEDKEKERALREEEWRKQEAKRVEKEQKFWSNERAWIEARDAALMEALKNLGGREMSKVEEAHDHKGVNVINGAEIQNQNEDGSEILNSTVRGSDNCPRDDSKEGNRKRKESFYFNNNEQCSMYNQGSGYCDVNDQREEIVKLQRNDHGSSPSDSNVGNIVANGDTCFPFMISEGGNLWENFGLKINKVNQNH 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02421 511 MobiDBLite consensus disorder prediction 404 428 - -
Mepo4g02421 511 ProSiteProfiles Myb-like domain profile. 124 189 IPR001005 -
Mepo4g02421 511 MobiDBLite consensus disorder prediction 234 258 - -
Mepo4g02421 511 PANTHER FI21293P1 74 378 - -
Mepo4g02421 511 MobiDBLite consensus disorder prediction 265 284 - -
Mepo4g02421 511 MobiDBLite consensus disorder prediction 96 131 - -
Mepo4g02421 511 MobiDBLite consensus disorder prediction 1 21 - -
Mepo4g02421 511 Coils Coil 312 332 - -
Mepo4g02421 511 Gene3D - 132 194 - -
Mepo4g02421 511 MobiDBLite consensus disorder prediction 96 123 - -
Mepo4g02421 511 FunFam trihelix transcription factor PTL-like 132 194 - -
Mepo4g02421 511 MobiDBLite consensus disorder prediction 414 428 - -
Mepo4g02421 511 CDD GT1 131 196 - -
Mepo4g02421 511 Pfam Myb/SANT-like DNA-binding domain 131 217 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02421 Mepo-Chr4 32335778 32339250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02421 414 506 Trihelix Transcription Factor Family AT5G03680 34.862 9.49e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mepo4g02421 Myb_DNA-bind_4 2.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02421 - - mtr:25483883 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02421 4 32335778 32339250 Mepo4g02421 4 32335778 32339250 ECH
Mepo3g03456 3 44491775 44494404 Mepo4g02421 4 32335778 32339250 PCT