Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02334 ATGGATCTTTCAGAAACATCACTCTGGTGGACTCAACAACATCAACAACATCATCATCAACAACAACAACCGATGTTATTAGTCGAACCAACTTCTTGGTCTCTCCATCACCACCAACCTCCATGGTTCAATTCTCAAATCCATGAAAACACACCTCATTACAACCTCAAACACATCGAAGATGAAGAATTAGACAACAACACCACCACCACCGTCATAAAACCCGAAGACGAAAAAGAATCAATGTTTGAGAAACCCTTAACACCTTCTGACGTAGGAAAACTTAACCGTCTTGTTATCCCAAAACAATACGCTGAAAAATACTTTCCACTCGGCGGAGCAGACTCCGCCGAGTGCAAAGGACTTTTACTCAGTTTTGAGGATGAGTCAGGGAAGTGTTGGCGTTTCCGTTACTCTTATTGGAACAGTAGTCAAAGCTATGTTCTAACAAAAGGTTGGAGTCGTTATGTCAAAGACAAACGACTCGATGCTGGCGATGTCGTTCTGTTTGAACGACATCGTGTTGATAGTCAGAGACTTTTTATCAACTGGAGGAGGAGGAGTGGGGATGATCAGTCGGCGTATGTTAGCAGAGGGGTGGGTCATCATGGTAAGGGTAGTGATGGGAATGGTAAGAATGAGGTTGTTAATGGTGTAGGGTGGTCCAGAGGGTTCTATTCTGCGCATGTTCCTTATCCTGCGCATCATCATCAAGTCTTGCCATACCAACAACATGATCAATGTCTTCATGCAGGTAGAGGGTCCCAAAGTCAGAACCAAAGGACGAAACCGGTGGGAAATAGTTCAAGTTCAACTTCTAGTTCAAGGGTACTTAGGTTGTTTGGGGTCAACATGGAATGCCAACCTGAACATGATTCTTCAACACCTCAATGTTCTTATGATAGTAACAATAATATGCCATTAACACAAGGTACTCTAGATACCTACCAATATTATCAACCTTCTAATTCCAATTCTCACCCTCACGTGGTACGTCACCAACCATATTACTACTAG 1017 0.4287 MDLSETSLWWTQQHQQHHHQQQQPMLLVEPTSWSLHHHQPPWFNSQIHENTPHYNLKHIEDEELDNNTTTTVIKPEDEKESMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLGGADSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRVDSQRLFINWRRRSGDDQSAYVSRGVGHHGKGSDGNGKNEVVNGVGWSRGFYSAHVPYPAHHHQVLPYQQHDQCLHAGRGSQSQNQRTKPVGNSSSSTSSSRVLRLFGVNMECQPEHDSSTPQCSYDSNNNMPLTQGTLDTYQYYQPSNSNSHPHVVRHQPYYY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02334 338 MobiDBLite consensus disorder prediction 251 275 - -
Mepo4g02334 338 Pfam B3 DNA binding domain 83 188 IPR003340 GO:0003677
Mepo4g02334 338 SUPERFAMILY DNA-binding pseudobarrel domain 79 191 IPR015300 -
Mepo4g02334 338 Gene3D - 73 198 IPR015300 -
Mepo4g02334 338 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 296 IPR044800 GO:0003700
Mepo4g02334 338 CDD B3_DNA 82 178 IPR003340 GO:0003677
Mepo4g02334 338 ProSiteProfiles B3 DNA-binding domain profile. 83 188 IPR003340 GO:0003677
Mepo4g02334 338 FunFam B3 domain-containing protein 76 197 - -
Mepo4g02334 338 SMART B3_2 83 188 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02334 Mepo-Chr4 31347372 31349798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02334 76 292 RAV Transcription Factor Family AT5G06250 52.655 1.08e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g02334 B3 2.4e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02334 K09287 - gmx:100795470 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02334 4 31347372 31349798 Mepo4g02334 4 31347372 31349798 ECH
Mepo3g03543 3 45237207 45239262 Mepo4g02334 4 31347372 31349798 PCT