Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02263 ATGGATGAAATCGAAGTTCCACAATACTTCATTTGCCCAATATCACTCCAAATAATGAAAGATCCTGTTACTGCCATAACAGGAATAACATATGATCGAGACAGCATTGAACATTGGTTATTCACAAACAAGAACACAACATGTCCTGTCACAAAACAACCTCTTCCATTAGATTCTGATTTAACACCAAATCATACACTTCGTCGTTTGATTCAATCTTGGTGCACACAAAATGCTTCACTTGGTATCGATAGAATTCCAACACCAAAACCACCACTCACAAAAATTCAAGTCCAAAAGCTTCTCAAAGGAATCAAAGATCCTAAGGTTCAGCTCAAGAGTTTAATGCAGTTGGAATTGCTTGCTGCTGAGAAAGCGAGTAATAGAAAGATTTTGTTGGAAAATGGTGTGCCGAAAGCGATGATTATGTTCATAGTTGATTGCTACAAAAACGGCGAAATTTATGAAGGTATTGAAGAAGCTCTTGGTTTTTTACAATTTGTTAAGGTTCCTACAGAAGAAGTGAAGAATCTTCTATTTGAAAACAATCAAATACTTGATTCTTTAACATGGATTTTAGTATCCGAGATGAAAAACTCGGTTACTGTAAAATCGCATGCGGTTTTAGTGCTTAAAAAATTCATAAACAAATGCGATTCAATCGTTTTAGAGAGACTAAAACCCGAATTCTTCGAAAGAATTGTGAAAGTTCTAAGAAATGGTGTAATAACACAACAAGGTTTGTCTTCTGCTTTACATATTTTACTATGTTGTTGTCCCTTGGGAAGAAATAGGTTAATGATGGTTGAAGCTGGTGCAATTTATGAACTAATAGAGATAGAATTAATGGCAATACATGAGAAGAGAATCACAGAACTCACTTTTGGTATTTTGTTTCATTTGTGTTCTTGTGCAAATGGAAGATTTCAGTTTTTGAGTCATCAAGGTTCAATTGCAGTATTGACTGAGAGAATCTTCAAGGTTTCAATGACAGTGGATGATAGAGCTGTTTTTATACTCTCTTTGATATCTAAATTTTCTGCTACAAAAATGGTTTTGGATGAGATGTTAAAAGTTGGAACTGTTCAAAAGCTTTTTGTTTTGCTTCAAGCTGATCATGCTAAGTATTTGAAGGATAAAGTGATGGAAATATTTAAGGCACATTCTGAGGTTTGGAAGAATTCTCCTTGCTTTCCTCAAGCATCTTTTTATGCTAGCTTTCATAGGTGA 1230 0.3455 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDSIEHWLFTNKNTTCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASLGIDRIPTPKPPLTKIQVQKLLKGIKDPKVQLKSLMQLELLAAEKASNRKILLENGVPKAMIMFIVDCYKNGEIYEGIEEALGFLQFVKVPTEEVKNLLFENNQILDSLTWILVSEMKNSVTVKSHAVLVLKKFINKCDSIVLERLKPEFFERIVKVLRNGVITQQGLSSALHILLCCCPLGRNRLMMVEAGAIYELIEIELMAIHEKRITELTFGILFHLCSCANGRFQFLSHQGSIAVLTERIFKVSMTVDDRAVFILSLISKFSATKMVLDEMLKVGTVQKLFVLLQADHAKYLKDKVMEIFKAHSEVWKNSPCFPQASFYASFHR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02263 409 Gene3D - 96 391 IPR011989 -
Mepo4g02263 409 SUPERFAMILY ARM repeat 100 375 IPR016024 -
Mepo4g02263 409 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Mepo4g02263 409 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Mepo4g02263 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Mepo4g02263 409 CDD RING-Ubox_WDSUB1-like 7 64 - -
Mepo4g02263 409 PANTHER WDSAM1 PROTEIN 3 399 IPR045185 GO:0061630
Mepo4g02263 409 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Mepo4g02263 409 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Mepo4g02263 409 SUPERFAMILY RING/U-box 3 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02263 Mepo-Chr4 30466377 30467729 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02263 2 398 U-box Gene Family AT3G11840 42.141 2.83e-117 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02263 - - gmx:100798446 566.614