Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02260 ATGAATCAAGATATTGAAGTTACACCATTTTTTCTTTGCCCTATTTCACTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCATCGGAAAACAAAACATGTCCTGTCACAAAACAACAACTCACACATGATGCAAATGATCTCATTATTCTCACTCCAAACCACACTCTTCGTAGACTCATCCAAGCATGGTGCACCATGAATTCTTCTTATGGAATCGAAAGGATTCCAACTCCAAAACCTCCAACAACAAAAACCCTTATAGAAAAACTCCTCAAAGAAGCTTCTGATTCTTCGGATTCACCTCATTTGCTTATTCAAACCCTAAAAAAGCTCAAAACAATTGCATCCGAGAGTGAGTCAAATCGACGGTGTATCGAATCGGCTGGCGCTGTTGAGTTCTTAGCATCAATAATAACAAAAAGCAATACAAGTTGTTCATCTTCATGTTCAACAACAGAATTAATTGAAGCTAGCTTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCTATAAACATCCTTTACAATCTTCAATTATCAGAACAAGGTTTGAAAACTCTCCTTAACTTAAAAAATGGAGAATTTTTAGACTCTCTAATGAGATTATTGCAAAAAGGTAACTATGATTCAAGAACATACGCAATCTTTATGTTGAAATCTATGTCAAAAGTAGCTGATCCATCAAAGCTAGCTAATCTAAAGACTGAGTTTTTCATCGAGTTAGTTCAACTTCTCAAAGACCAGATATCAAAGAAAGCATCTAAAGCAACACTACAAACGCTAATCCAACTCGTCGAATTCGGAAGAAATAGAGTAAAAGCAATTGAATCAGGTTGTGTTTCTGCTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATATTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTATTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTCTGAGGGTTTCAACTATGGCTAATGATAGAGCTGTGAGGATTCTTCTTTCTGTTTCAAGATTTTCTGCTACACATTTTGTTGTTCAAGAAATGCTACGAATTGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATTCAAAGTCTTGGATGAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAACAAATGGGTAA 1326 0.359 MNQDIEVTPFFLCPISLQLMKDPVTVSTGITYDRESIEKWLFSSENKTCPVTKQQLTHDANDLIILTPNHTLRRLIQAWCTMNSSYGIERIPTPKPPTTKTLIEKLLKEASDSSDSPHLLIQTLKKLKTIASESESNRRCIESAGAVEFLASIITKSNTSCSSSCSTTELIEASFDDDDVEGFAFDFKIGAEDEAINILYNLQLSEQGLKTLLNLKNGEFLDSLMRLLQKGNYDSRTYAIFMLKSMSKVADPSKLANLKTEFFIELVQLLKDQISKKASKATLQTLIQLVEFGRNRVKAIESGCVSALIELLLDCKERKPCEMILVLLEMLCQCADGRFELLSHGCGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHFVVQEMLRIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKSWMNSHCIPFNLLASYPTTNG 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02260 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Mepo4g02260 441 SUPERFAMILY RING/U-box 5 88 - -
Mepo4g02260 441 PANTHER WDSAM1 PROTEIN 4 429 IPR045185 GO:0061630
Mepo4g02260 441 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Mepo4g02260 441 Pfam U-box domain 8 84 IPR003613 GO:0004842|GO:0016567
Mepo4g02260 441 Gene3D - 97 429 IPR011989 -
Mepo4g02260 441 SUPERFAMILY ARM repeat 102 374 IPR016024 -
Mepo4g02260 441 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Mepo4g02260 441 CDD RING-Ubox_PUB 9 59 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02260 Mepo-Chr4 30437414 30438739 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02260 1 437 U-box Gene Family AT3G52450 53.950 7.28e-159 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02260 - - tpra:123902305 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02260 4 30437414 30438739 Mepo4g02260 4 30437414 30438739 ECH
Mepo3g03591 3 45683908 45685564 Mepo4g02260 4 30437414 30438739 PCT