Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02259 ATGAATCAAGATATTGAAGTTACACCATTTTTTCTTTGCCCTATTTCACTACAACTCATGAAGGATCCAGTCACTGTCTCAACAGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGCTCTTTTCATCGGAAAACAAAACATGTCCTGTCACAAAACAACAACTCACACATGATGCAAATGATCTCATTATTCTCACTCCAAACCACACTCTTCGTAGACTCATCCAAGCATGGTGCACCATGAATTCTTCTTATGGAATCGAAAGGATTCCAACTCCAAAACCTCCAACCACAAAAACCCTCATTCAAAAACTCCTCAAAGAAGCTTCTGATTCTTCAGATTCACCTCATTTACTTGTCCAAACCCTAAAAAAGCTCAAAACAATTGCCTCCGAGAGTGAGTCAAATCGACGGTGTATTGAATCGGCTGGCGCTGTTGAGTTCTTAGCATCAATAGTAACAAAAAACAACACAGGTTGTTCATCTTCATGTTCAACAACGGAATTAATTGAAGCTAGCTTTGATGATGATGATGTTGAAGGTTTTGCTTTTGACTTCAAAATAGGTGCAGAAGATGAAGCTATAAACATCCTTTACAATCTTCAATTATCAGAACAAGGTTTGAAAACTCTCCTTAACTTAAAAAATGGAGAATTTTTAGACTCTCTAATGAGATTATTGCAAAAAGGTAACTATGATTCAAGAACATACGCAATCTTTATGTTGAAATCTATGTCAAAAGTAGCTGATCCATCAAAGCTAGCTAATCTAAAGACTGAGTTTTTCATCGAGTTAGTTCAACTTCTCAAAGACCAGATATCAAAGAAAGCATCTAAAGCAACACTACAAACGCTAATCCAACTCGTCGAATTCGGAAGAAATAGAGTAAAAGCAATTGAATCAGGTTGTGTTTCTGCTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATATTGGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTTGAACTATTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTCTGAGGGTTTCAACTATGGCTAATGATAGAGCTGTGAGGATTCTTCTTTCTGTTTCAAGATTTTCTGCTACACATTTTGTTGTTCAAGAAATGCTACGAATTGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCAAAGGAGAAAGCAAGGGAGATTCTTAAATTGCATTCAAAGTCTTGGATGAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAAGTGGGTAA 1323 0.3643 MNQDIEVTPFFLCPISLQLMKDPVTVSTGITYDRESIEKWLFSSENKTCPVTKQQLTHDANDLIILTPNHTLRRLIQAWCTMNSSYGIERIPTPKPPTTKTLIQKLLKEASDSSDSPHLLVQTLKKLKTIASESESNRRCIESAGAVEFLASIVTKNNTGCSSSCSTTELIEASFDDDDVEGFAFDFKIGAEDEAINILYNLQLSEQGLKTLLNLKNGEFLDSLMRLLQKGNYDSRTYAIFMLKSMSKVADPSKLANLKTEFFIELVQLLKDQISKKASKATLQTLIQLVEFGRNRVKAIESGCVSALIELLLDCKERKPCEMILVLLEMLCQCADGRFELLSHGCGLAIVSKKILRVSTMANDRAVRILLSVSRFSATHFVVQEMLRIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKSWMNSHCIPFNLLASYPTSG 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02259 440 SUPERFAMILY RING/U-box 5 88 - -
Mepo4g02259 440 PANTHER WDSAM1 PROTEIN 4 429 IPR045185 GO:0061630
Mepo4g02259 440 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Mepo4g02259 440 Pfam U-box domain 8 84 IPR003613 GO:0004842|GO:0016567
Mepo4g02259 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Mepo4g02259 440 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Mepo4g02259 440 CDD RING-Ubox_PUB 9 59 IPR045210 -
Mepo4g02259 440 Gene3D - 95 424 IPR011989 -
Mepo4g02259 440 SUPERFAMILY ARM repeat 102 374 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02259 Mepo-Chr4 30417132 30418705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02259 1 437 U-box Gene Family AT3G52450 53.950 3.13e-158 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02259 - - tpra:123902305 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02259 4 30417132 30418705 Mepo4g02259 4 30417132 30418705 ECH
Mepo4g02259 4 30417132 30418705 Mepo3g03591 3 45683908 45685564 PCT