Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02243 ATGCACGCGGTATTATCCTCTACATTCCACCCCATTCTCCTTATTCTACTCCATCATTTTAAATACCCATTGACTTCAAAAGTCTTTCTTCTCTCTTTCATTTCTGAATCGAATCTCACGCACACAAAAATGAACAACTTATTCACCGGTTCATTCTCTCGCTTCCGTAGCGAAGAAGTTTCACCGGACCGGCACCACGTCATCGAGATGACAGACGGTGCCGGTGCCGGAGCCAGAACCGGAGCAGGAGCAGGAGGTAGAATAAACCTCGACAAATTCTTCGACGACGTCGAAGGAGTAAAAGACGATTTAAAAGAGCTAGAATCAATCCACCAACGACTTTCAAAGACTAACGAACAGACGAAAACGGTTCACGATGCTAAAGGAGTGAAGGAGCTTCGTTCAAGTATGGACGAAGAAGTTTCTGTGGCGTTGAAGAAAGCGAAGATGGTGAAGCTGAAGCTGGAAGCGTTGGAAAGATCTAATGCAGCGAACCGGAATTTGGAAGGGTGTGGACCGGGTTCGTCGTCGGACCGGACGAGGAGTTCGGTGGTGAATGGGTTGAAGAAGAAGTTGAAGGATTCTATGGAGAGTTTTAATCGTTTGCGTGAAGTTATTACTACGGAGTATAGAGAGACTGTTCAACGGCGTTATTTTACTGTTACTGGAGAGAATCCTGATGATAAGACTCTTGATCTATTGATCTCTACTGGTGAGAGTGAGACCTTTCTTCAGAAAGCAATTCAAGAACAGGGCAGGGGAAGAATTCTGGACACCATCAATGAAATTCAAGAGAGACATGATGCTGTCAAAGACTTGGAGAAGAGTCTACTGGCACTGCACCAAGTGTTCCTCGACATGACAGTAATGGTACAATTTCAAGGTGAACAATTGGACGATATCGAGAGCCATGTGGCGAGGGCGAGCTCGTTTGTGCACACTGGTACCGAACAGTTACATACTGCAAGGAAGCACCAGAAAAACACTAGGAAATGGGCCTGTTATTGTATTATACTTCTACTGATCATTGTCTTGATTGTGGTTCTTGCCACGGTGAAACCGTGGCAACATAATGATAGTGGTGGCGGTGGGGGTAGTCAGCCTGCTCCAGCTCAGACTCCCCCGTCACCTCCTCCTCCTTCAGGTGGTACTTAA 1155 0.4623 MHAVLSSTFHPILLILLHHFKYPLTSKVFLLSFISESNLTHTKMNNLFTGSFSRFRSEEVSPDRHHVIEMTDGAGAGARTGAGAGGRINLDKFFDDVEGVKDDLKELESIHQRLSKTNEQTKTVHDAKGVKELRSSMDEEVSVALKKAKMVKLKLEALERSNAANRNLEGCGPGSSSDRTRSSVVNGLKKKLKDSMESFNRLREVITTEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDLEKSLLALHQVFLDMTVMVQFQGEQLDDIESHVARASSFVHTGTEQLHTARKHQKNTRKWACYCIILLLIIVLIVVLATVKPWQHNDSGGGGGSQPAPAQTPPSPPPPSGGT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02243 384 Coils Coil 97 117 - -
Mepo4g02243 384 Pfam SNARE domain 296 348 IPR000727 -
Mepo4g02243 384 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 260 322 IPR000727 -
Mepo4g02243 384 FunFam Syntaxin 132 253 353 - -
Mepo4g02243 384 SMART SynN_4 85 211 IPR006011 GO:0016020
Mepo4g02243 384 SUPERFAMILY t-snare proteins 89 315 IPR010989 GO:0016020|GO:0016192
Mepo4g02243 384 CDD SNARE_syntaxin1-like 259 319 - -
Mepo4g02243 384 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 87 217 - -
Mepo4g02243 384 SMART tSNARE_6 255 322 IPR000727 -
Mepo4g02243 384 Pfam Syntaxin 92 295 IPR006011 GO:0016020
Mepo4g02243 384 PANTHER SYNTAXIN 108 343 IPR045242 -
Mepo4g02243 384 ProSitePatterns Syntaxin / epimorphin family signature. 266 305 IPR006012 GO:0005484|GO:0006886|GO:0016020
Mepo4g02243 384 CDD SynN 90 247 IPR006011 GO:0016020
Mepo4g02243 384 Gene3D - 257 353 - -
Mepo4g02243 384 MobiDBLite consensus disorder prediction 370 384 - -
Mepo4g02243 384 Gene3D - 88 220 - -
Mepo4g02243 384 MobiDBLite consensus disorder prediction 358 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02243 Mepo-Chr4 30216324 30219261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02243 82 378 SNARE and Associated Proteins AT3G11820 69.836 1.14e-143 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02243 K08486 - gmx:100809258 461.455