Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02241 ATGGCTAGTGCTACCACTGGTTCCTTCCCTATCTACCACAGACTCTTCAACTTTTCCTTTACTACCCATTCTTCCATTTCACTCATCACCCTTAACTTCCCACACAGACCAACAACACCCATTTCTTCAAAACCCTTCACTTTAATCCCTCAATCATTCAACCCTTCATTTTCTTTCCATGAATTCCAAGAAGAAGATGAAGAAGAAGAAGAAGACGACCCTGAACCCGAAATTGAAACTTTACAAAATTCAGACCCAAAACTAAGACTCTTTGTTGGAAACTTGCCATTTTCATTATCTTCTTTTCAATTGGCTCAACTCTTTGGAGAAGCTGGAAATGTTGTGTCTGTCGAGATTGTGTATGATGACATCACAAATAGAAGCAGAGGATTTGCATTTGTTACAATGGGGAGCGTGGAGGATGCTGAAGAAGCAATTCGAATGTTTGATGGCACTACAGTTGGAGGTAGGGCTATTAAGGTAAACTTCCCAGAAGTGCCCAAAGTAGGCAAAAGGGTACAAATGGGCTCAAACTATAGAGGTTATGTAGACAGCCCTCACAAGATATATGCTGGAAACCTCGGTTGGGATATGACTTCCAAGCATCTTAGAGAAGCCTTTGCTGAGCAACCAGGCTTACTGAGTGCCAAGGTCGTCTACGAAAGGAACAACGGAAAATCTCGTGGATATGGATTTGTCTCTTTCAAAACTGCTGAGGATGTAGAGGTTGCTTTGAGTGCTATGAACGGCGTGGAGGTTCAAGGCCGACCTTTACGACTGAGTTTGGCTGTAGATAACAGGAAGCCTTTATCTCCTTCGGTAATTGATCAAAATAAAGGAAATAATGTTGATAGCTTGGAAATGTTATTTGGAATAAGCAAATGA 885 0.4158 MASATTGSFPIYHRLFNFSFTTHSSISLITLNFPHRPTTPISSKPFTLIPQSFNPSFSFHEFQEEDEEEEEDDPEPEIETLQNSDPKLRLFVGNLPFSLSSFQLAQLFGEAGNVVSVEIVYDDITNRSRGFAFVTMGSVEDAEEAIRMFDGTTVGGRAIKVNFPEVPKVGKRVQMGSNYRGYVDSPHKIYAGNLGWDMTSKHLREAFAEQPGLLSAKVVYERNNGKSRGYGFVSFKTAEDVEVALSAMNGVEVQGRPLRLSLAVDNRKPLSPSVIDQNKGNNVDSLEMLFGISK 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02241 294 SUPERFAMILY RNA-binding domain, RBD 184 268 IPR035979 GO:0003676
Mepo4g02241 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Mepo4g02241 294 FunFam 33 kDa ribonucleoprotein, chloroplastic 169 273 - -
Mepo4g02241 294 MobiDBLite consensus disorder prediction 62 79 - -
Mepo4g02241 294 SMART rrm1_1 188 261 IPR000504 GO:0003723
Mepo4g02241 294 SMART rrm1_1 89 162 IPR000504 GO:0003723
Mepo4g02241 294 Gene3D - 56 169 IPR012677 -
Mepo4g02241 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 160 IPR000504 GO:0003723
Mepo4g02241 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 259 IPR000504 GO:0003723
Mepo4g02241 294 MobiDBLite consensus disorder prediction 61 83 - -
Mepo4g02241 294 SUPERFAMILY RNA-binding domain, RBD 84 171 IPR035979 GO:0003676
Mepo4g02241 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 265 IPR000504 GO:0003723
Mepo4g02241 294 PANTHER OS02G0815200 PROTEIN 35 267 - -
Mepo4g02241 294 Gene3D - 170 272 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02241 Mepo-Chr4 30201513 30204174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02241 90 263 Eukaryotic Initiation Factors Gene Family AT2G23350 32.778 2.00e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02241 - - ccaj:109819134 323.168