Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02163 ATGAGGGGAAGAAGTTACAGTTACAGTCCTTCACCTCCAAGGCATTACGGTCGAAGAGGACGCAGTCCTAGTCCGAGAGGCCGGTATGGAGGACGTTATAGAGGCGGCCGTGATAGGGATTTGCCTACAAGTCTTCTTGTCCGAAACCTGGCCAAAGATTGCAGGCCTGAAGATCTGCACGATCCATTTGGTCAATTTGGTCCTGTCAAGGATGTTTACCTGCCTCGTGATTATTACACTGGGGAGCCAAGGGGTTTCGGGTTTGTTCAATTTGTGGATCCAGCTGATGCTGCAGATGCGAAATATCACATGGATGGTCAAGTTCTTCTTGGTCGTGAGTTAACTGTGGTGTTTGCTGAAGAAAACAGAAAGAAACCTCAAGAAATGAGAGCAAGAGAACGTGGGAGGTCATATGATTATAGGCGGTCTCCACGTCGTCGTTCTCGTTCACCACGCTATGCACGAACCTATTCACGTAGTCCAGACTATACACCTTCACCAAGAAGAAGGCGATATTCCAGGTCAATCTCACCAAGAGACGAAAGGTATAGGAGACGGTCATACTCTAGATCCCCTTATAGATCACCTTATGGATCTAGAAGCCCTGGTAGAGGTAGGAGTTACAGCAGGAGCATAAGCCGCAGTCCAGGGTACTCAAGGTGA 663 0.4842 MRGRSYSYSPSPPRHYGRRGRSPSPRGRYGGRYRGGRDRDLPTSLLVRNLAKDCRPEDLHDPFGQFGPVKDVYLPRDYYTGEPRGFGFVQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRRSRSPRYARTYSRSPDYTPSPRRRRYSRSISPRDERYRRRSYSRSPYRSPYGSRSPGRGRSYSRSISRSPGYSR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02163 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
Mepo4g02163 220 Gene3D - 37 160 IPR012677 -
Mepo4g02163 220 MobiDBLite consensus disorder prediction 123 140 - -
Mepo4g02163 220 MobiDBLite consensus disorder prediction 123 220 - -
Mepo4g02163 220 SUPERFAMILY RNA-binding domain, RBD 43 149 IPR035979 GO:0003676
Mepo4g02163 220 MobiDBLite consensus disorder prediction 192 220 - -
Mepo4g02163 220 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 42 211 - -
Mepo4g02163 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 114 IPR000504 GO:0003723
Mepo4g02163 220 MobiDBLite consensus disorder prediction 1 41 - -
Mepo4g02163 220 MobiDBLite consensus disorder prediction 164 188 - -
Mepo4g02163 220 SMART rrm1_1 44 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02163 Mepo-Chr4 29179722 29182609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02163 43 164 Eukaryotic Initiation Factors Gene Family AT3G16380 31.148 2.66e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02163 K12900 - gmx:100816913 192.586