Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02159 ATGTCTGCAACTATGAGAACAGCTACATGGGCAGATTCTGCTGACAATGCAGCTAATGCTTCATCTGCCGCGCGCCCGGTCAAGCCGGCGTATGTTCCTCCGCATCTTCGTAACCGATCAATGGCTGCTCCGGCCGAGCCACCTTCTTTGGTGGCTAATGATAGGGGTTTGGGTAATAATTGGGGTAGTTCATCGAATTTTAAGCAGGATTTTGGGGCTGGGAGACAAGTAGGTGGAGGATATGGTGGTGGTGGTGGGTTTGGTGGGTTTAGCAGAGGAGGAGCGGGGAATGGGAGGGAGCGTGTGGGTGGAGGTGGAGGAAGACGTGAGGTGAATCCATTTGAGAACGATGTTGATGAACCGTTTACTGAGCAAGAGAATACGGGGATTAACTTTGATGCTTATGATGATATTCCTGTGGAGACGAGTGGGGAGAATGTTCCGCCTCCGGTGAATACGTTTGCGGAAATAGATTTGGGTGATGCGTTGAATCAGAATATAAAGAGATGCAAGTATGTGAAACCGACACCGGTTCAGAGGTATGCTATACCGATTTCGCTTGCTGGGAGAGATTTGATGGCTTGTGCTCAGACGGGTTCAGGAAAGACAGCTGCATTTTGCTTTCCGATTATAAGCGGAATCCTTAGGGAGCAGTATGCTCAAAGACCACGTGTGGCACGTACTGCTTATCCTCTTGCACTTATCCTGTCCCCTACTCGGGAGCTCTCTTGTCAGATACATGACGAGGCCAAGAAGTTTTCTTATCAAACTGGGGTCAAGGTCGTAGTTACTTATGGAGGAGCACCGATCACCCAACAGTTGCGGGAGCTTGAGAGAGGTGTTGATATTCTGGTGGCAACTCCAGGACGATTAGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATCTAGCTCTTGATGAAGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGCTGTTTAGTGCAACATTTCCCAAAGAGATACAGAGACTTGCTTCAGATTTTCTTGCTAGTTATATCTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTAGAATATGTGCTGGAGTCTGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGAGAAAATGATGTGAATGGCAAGCAAGGTCTGACTTTAGTGTTTGTGGAAACGAAGAAAGGTGCTGATGCATTGGAACACTGCTTGTGTGTTAACGGGTTTCCTGCAACTTGCATTCATGGCGACAGAACACAGCAAGAAAGAGAACAAGCATTGAGATCATTCAAGACTGGAAACACTCCAATTCTAGTGGCAACGGATGTTGCAGCACGTGGTCTGGATATTCCACGGGTAGCACATGTGGTAAACTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGACGAGCTGGTAAAATGGGATTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCACTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCATGGCTCACCCGTTATGCAGCAAGGACTCCTTATGGTGGTGGTAGAAACAAGCGGACTGGGGGAGCCCGGTTTGGTGGCCGTGATGTTAGGAAGGAGAGCTCGTATAATAAAGGAAATGATTACTATGGTGGAAACGGTGGTGGTTATGGTGTTCCTGCCAGTTATGGCGGAGGGTATGGTCAAGGTGTAACTAGTGCTTGGGATTAG 1824 0.4742 MSATMRTATWADSADNAANASSAARPVKPAYVPPHLRNRSMAAPAEPPSLVANDRGLGNNWGSSSNFKQDFGAGRQVGGGYGGGGGFGGFSRGGAGNGRERVGGGGGRREVNPFENDVDEPFTEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIKRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVTYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGGRNKRTGGARFGGRDVRKESSYNKGNDYYGGNGGGYGVPASYGGGYGQGVTSAWD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02159 607 Gene3D - 370 548 IPR027417 -
Mepo4g02159 607 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 125 545 - -
Mepo4g02159 607 MobiDBLite consensus disorder prediction 560 574 - -
Mepo4g02159 607 Pfam Helicase conserved C-terminal domain 391 506 IPR001650 -
Mepo4g02159 607 MobiDBLite consensus disorder prediction 88 121 - -
Mepo4g02159 607 SMART helicmild6 425 506 IPR001650 -
Mepo4g02159 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 367 IPR014001 -
Mepo4g02159 607 Pfam DEAD/DEAH box helicase 176 356 IPR011545 GO:0003676|GO:0005524
Mepo4g02159 607 CDD SF2_C_DEAD 379 515 - -
Mepo4g02159 607 CDD DEADc_DDX3_DDX4 153 373 IPR044763 GO:0003724|GO:0005524
Mepo4g02159 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 545 IPR001650 -
Mepo4g02159 607 SMART ultradead3 171 382 IPR014001 -
Mepo4g02159 607 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Mepo4g02159 607 MobiDBLite consensus disorder prediction 15 34 - -
Mepo4g02159 607 FunFam Probable ATP-dependent RNA helicase DDX4 115 369 - -
Mepo4g02159 607 MobiDBLite consensus disorder prediction 551 576 - -
Mepo4g02159 607 FunFam ATP-dependent RNA helicase RhlB 370 548 - -
Mepo4g02159 607 Gene3D - 111 369 IPR027417 -
Mepo4g02159 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 523 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02159 Mepo-Chr4 29101683 29107506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02159 150 538 Eukaryotic Initiation Factors Gene Family AT3G19760 29.923 4.30e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02159 K11594 - gmx:100818326 895.575