Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02154 ATGAGGAACCAAGAATCAGGTTCGATTCCAATGGACATTGATCTGGAACCCATTGTTAATGATTCTTTTCGTCGTAGTAATCTTTATGAATCAGGATCGGTTCCGATGGACATTGATCTGGATCATATTTTGGAAAAGAGCAAGACATCAGAGAAAAAGGAGAATGTTGATAAAAAGGGTTATTGCAATGATAGAGGTTTCTATGATTGTAATATTTGTTTTGATTTGGCTAAGGATCCTGTTCTTACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCTTATATAGATGGTTGAATACAAAATCACCATGGTCGTTTACAAGATCCTCTCTAGCTAAAGAATGTCCTGTTTGCAAGGGTGAAGTTACTGATAAGACTGTTACTCCAATTTATGGTGGTGGGAATGACGTCGAGGTTCGTAACGAGGATTCAAGTTCTACCGCTCTGCAAATCCCTCCCAGGCCTAATGCAAGGCGTGTCTCGAAGGCTCCTAAAGGATTGTTTGCCAATGATCCTGTATTTTTTTCTTTTTCTTTTTCCAATAGGGTTTATACTTTATAA 561 0.3832 MRNQESGSIPMDIDLEPIVNDSFRRSNLYESGSVPMDIDLDHILEKSKTSEKKENVDKKGYCNDRGFYDCNICFDLAKDPVLTCCGHLFCWPCLYRWLNTKSPWSFTRSSLAKECPVCKGEVTDKTVTPIYGGGNDVEVRNEDSSSTALQIPPRPNARRVSKAPKGLFANDPVFFSFSFSNRVYTL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02154 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 46 161 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo4g02154 186 Pfam Zinc finger, C3HC4 type (RING finger) 70 118 IPR018957 GO:0046872
Mepo4g02154 186 SUPERFAMILY RING/U-box 69 125 - -
Mepo4g02154 186 ProSitePatterns Zinc finger RING-type signature. 85 94 IPR017907 -
Mepo4g02154 186 ProSiteProfiles Zinc finger RING-type profile. 70 119 IPR001841 -
Mepo4g02154 186 SMART ring_2 70 118 IPR001841 -
Mepo4g02154 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 136 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02154 Mepo-Chr4 29028315 29028875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02154 51 160 C3H Transcription Factor Family AT3G58030 56.364 6.71e-36 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02154 K10666 - mtr:120580722 250.751