Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02141 ATGGAACAAGAGCCTAGCAAGCAGCTTCCTTGTGACTCCAATGGCGTATGCCTGGCCTGCAAAGAGACGTATCGAGAATTTGAGACCCTCCTTTGCAAAACTTGCAAAAAGCTATGGCATATGCTATGTTTACTCCTCCTTCCCAGTACATTCTATGATTGGGAATGCCCTGGTTGTTCTCAGCCCATCGACATCAACAATGTTGCCAGTCCACCTTTGTTTAGCGATGAAGAAATGGCGGAAATGTATGAAGAACTTGTTGTTGGATCCTCTACTGAAAACAACATTGGAAGCAATGTCGTGTTTGATATCTCTAGCATTAAATGTTCATATTGCATGGAATTGCCGGAGAGACCTGTCACAACTCCCTGTGGGCACAATTTTTGCCTTAAGTGTTTTCTAAAATGGATTGAGCAAGGAAAACGCAAATGCTCAAATTGTACAACAATAATTCCAGCAAAGATGGCAAAGAATCCAAAAATCAATTTTCAGTTGGTAAACGCCATTCGTATGGCCAAGTTAGCAAGACCTGAGAGTGTTGGAGCAAGCACTTCTACAAATTTTTATCATATTGTTCATGATGATCAGCGTCTTGACATTTGTTACAAGAATGAAAGAACAAATGAACCGGGAAAAGTTAATGTTGATAGTGGGAAGATATTCGTGATGATTCCAAAAGATCATTTTGGACCGATTATTGCTGAGAATGATCCAACAAGGAACCGTGGGGTTCTTGTTGGTGATACATGGGAAGATAGGATGGAATGCAAGAAATGGGGTGCTCATTTTCCCCATATTGCTGGGATTGCTGGTCAAAGTAGTCAGGGTGCCCAATCAGTTGCTCTCTCTGGTGGGTATGATGAAGACGAAGATCACGGTGAGTGGTTCCTCTATACGGGAAGTGGTGGAAGGGATGTTAAGGGCAACAGAGGTACTAATAAAAAACAATCATTTGATCAAAAATTTAAACATAGGAATGAGGCATTGAGACTCAGTTGCCGAAAAGGCTATCCTGTTCGTGTTATAAGGTCCCACAAGGGAAAACATTCCTCCTTTGCACCAAAATCAGGAGTGAGATATGATGGGGTTTATAGAATTGAGAAATGTTGGCGCAGAATTGGAAAACAAGGTTATAAAGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCTCCATGGACAAGTGAGTTATTAGGAGACCGTCCCCGACCATTACCTATAATTCAGGAGTTTAGGGATGCAATTGATATTACTGAAAGGAATGGTGATCCATCATGGGATTTTGATGAGGAAAAGGGTTGCTGGCTGTGGAAGAAGCCTCCACCGCTAAGTAAGAAGCCGACGAACATTGTCGATCCTATCGATGGAGTAAAAATAAAAGATGTTACGCCAAAAGAAAAAAAGGCGTCCTTCAAAATCAGGGATAGGCTATTGAAAGAGTTTGTTTGCAATATTTGTCACAACGTTTTAGCTTCCCCTCTTACAACACCTTGTGCTCACAACTTCTGCAAAGTCTGCCTTGAGGGTGCCTTTTCTGAGCAAAAGAACATTATAAAATGCCCGACTTGTTCAACTAACATTGCTGATTATCTTCAAAATCCACAGGTTAATAAAGAAATAATGGATGTCATAGAATCACTCCAGCGAGAGGCTGAACAAATGGAGAGTTCTGAAGAATCAATTGCTGAAAGTGATGAAAATCTCATGCTGGATGAGGAGATAGATGTTTCAAAACCATGTGATTCAAGTGAAATATTTTTGGAGAAAATTAACGAGAATGATCTGAATGCTCCACAAAAGAGGAGGAAAGGTAATGGAGGCAAGGTTGTGGTGAACATGGAAAAACATATTGATTAG 1863 0.4079 MEQEPSKQLPCDSNGVCLACKETYREFETLLCKTCKKLWHMLCLLLLPSTFYDWECPGCSQPIDINNVASPPLFSDEEMAEMYEELVVGSSTENNIGSNVVFDISSIKCSYCMELPERPVTTPCGHNFCLKCFLKWIEQGKRKCSNCTTIIPAKMAKNPKINFQLVNAIRMAKLARPESVGASTSTNFYHIVHDDQRLDICYKNERTNEPGKVNVDSGKIFVMIPKDHFGPIIAENDPTRNRGVLVGDTWEDRMECKKWGAHFPHIAGIAGQSSQGAQSVALSGGYDEDEDHGEWFLYTGSGGRDVKGNRGTNKKQSFDQKFKHRNEALRLSCRKGYPVRVIRSHKGKHSSFAPKSGVRYDGVYRIEKCWRRIGKQGYKVCRYLFVRCDNEPAPWTSELLGDRPRPLPIIQEFRDAIDITERNGDPSWDFDEEKGCWLWKKPPPLSKKPTNIVDPIDGVKIKDVTPKEKKASFKIRDRLLKEFVCNICHNVLASPLTTPCAHNFCKVCLEGAFSEQKNIIKCPTCSTNIADYLQNPQVNKEIMDVIESLQREAEQMESSEESIAESDENLMLDEEIDVSKPCDSSEIFLEKINENDLNAPQKRRKGNGGKVVVNMEKHID 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02141 620 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 574 IPR013083 -
Mepo4g02141 620 ProSiteProfiles Zinc finger RING-type profile. 485 526 IPR001841 -
Mepo4g02141 620 CDD RING-HC_ORTHRUS_rpt1 105 152 IPR047498 -
Mepo4g02141 620 Pfam Zinc finger, C3HC4 type (RING finger) 485 525 IPR018957 GO:0046872
Mepo4g02141 620 Pfam Zinc finger, C3HC4 type (RING finger) 109 147 IPR018957 GO:0046872
Mepo4g02141 620 ProSiteProfiles Zinc finger RING-type profile. 109 148 IPR001841 -
Mepo4g02141 620 SMART G9a_1 234 391 IPR003105 -
Mepo4g02141 620 SUPERFAMILY FYVE/PHD zinc finger 6 62 IPR011011 -
Mepo4g02141 620 SUPERFAMILY RING/U-box 472 531 - -
Mepo4g02141 620 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 187 IPR013083 -
Mepo4g02141 620 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 98 561 IPR045134 -
Mepo4g02141 620 MobiDBLite consensus disorder prediction 599 620 - -
Mepo4g02141 620 SMART ring_2 17 59 IPR001841 -
Mepo4g02141 620 SMART ring_2 485 525 IPR001841 -
Mepo4g02141 620 SMART ring_2 109 147 IPR001841 -
Mepo4g02141 620 ProSitePatterns Zinc finger PHD-type signature. 17 59 IPR019786 -
Mepo4g02141 620 Gene3D - 211 403 IPR036987 -
Mepo4g02141 620 Pfam SAD/SRA domain 242 390 IPR003105 -
Mepo4g02141 620 ProSiteProfiles YDG domain profile. 239 387 IPR003105 -
Mepo4g02141 620 ProSiteProfiles Zinc finger PHD-type profile. 14 62 IPR019787 -
Mepo4g02141 620 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 210 405 - -
Mepo4g02141 620 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Mepo4g02141 620 SUPERFAMILY RING/U-box 106 174 - -
Mepo4g02141 620 Coils Coil 539 569 - -
Mepo4g02141 620 SUPERFAMILY PUA domain-like 216 411 IPR015947 -
Mepo4g02141 620 ProSitePatterns Zinc finger RING-type signature. 500 509 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02141 Mepo-Chr4 28776547 28779944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02141 8 559 C2H2 Transcription Factor Family AT5G39550 51.515 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02141 K10638 - gmx:100786796 750.74