Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02131 ATGGAACTTGGTTTGAGCTTAGGTGACACACCAAAATTACCTTTCTCTTTTCTAGACAAACCCAACAAAGATCCATTACCAAGTTTCTTCTCAACACAAGGAAAAGCTTCTGAGGAAAAAAGAGGTTCTTCAGATCCACCTATTCAACTAGACCTTCTTCCTTTCACTCCTGTTCTTAGATCTCCTCACCCTTCTTCTCACCTTCCCATTCCTTGGCTCACTCAACCATGTGGACCGGTGAGGGAGCTAGACGTGAACCGTTTCCCGGCGGCGACGACCGAAGACGTTGACGACGGGACCTCATTGTCATCCCCCAGCAGTTCTGTGTCACCATTTGGAATGGATTTCAGTATGAGGAATAACAATGCTGATTATGGAGGAAGAAACAAGAGAGAAAATGAAGGTGAAGCTGAAAGAGGGAGTGATGATGATGAAAATGGGTCAACTAGGAAGAAACTAAGACTTTCTAAAGATCAATCTGCTTTTCTTGAAGAAAGTTTCAAAGAACACACCACTCTTAATCCTAAGCAAAAACTTGCACTGGCTAAACAGTTGAATCTTAGTCCTCGTCAAGTTGAAGTTTGGTTTCAAAATAGAAGAGCAAGGACAAAGTTAAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGTTGTGAGACACTAACAGAAGAGAATAGAAGATTACAAAAAGAACTTCAAGAGCTTAGAGCTTTGAAAACTACTCAACCATTCTACATGCAACTTCCAGCTACCACTCTCACTATGTGTCCTTCTTGTGAACGTGTGGCTACAAACCCTTGCAACAACCAAACCAACAAGTCAAGAATATTGCCATTCTCTAATGCTCAAGCCCAACAACATCAGGCCCAAGCCCATCAGATTCCTTCCTGA 894 0.4206 MELGLSLGDTPKLPFSFLDKPNKDPLPSFFSTQGKASEEKRGSSDPPIQLDLLPFTPVLRSPHPSSHLPIPWLTQPCGPVRELDVNRFPAATTEDVDDGTSLSSPSSSVSPFGMDFSMRNNNADYGGRNKRENEGEAERGSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTQPFYMQLPATTLTMCPSCERVATNPCNNQTNKSRILPFSNAQAQQHQAQAHQIPS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02131 297 FunFam Homeobox-leucine zipper protein 18 135 211 - -
Mepo4g02131 297 Pfam Homeodomain 150 204 IPR001356 GO:0003677
Mepo4g02131 297 SUPERFAMILY Homeodomain-like 143 207 IPR009057 -
Mepo4g02131 297 CDD homeodomain 150 207 IPR001356 GO:0003677
Mepo4g02131 297 SMART halz 206 249 IPR003106 GO:0006355|GO:0043565
Mepo4g02131 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 38 286 - -
Mepo4g02131 297 ProSitePatterns 'Homeobox' domain signature. 181 204 IPR017970 GO:0000981|GO:0006355
Mepo4g02131 297 ProSiteProfiles 'Homeobox' domain profile. 146 206 IPR001356 GO:0003677
Mepo4g02131 297 MobiDBLite consensus disorder prediction 1 56 - -
Mepo4g02131 297 Coils Coil 212 242 - -
Mepo4g02131 297 SMART HOX_1 148 210 IPR001356 GO:0003677
Mepo4g02131 297 Pfam Homeobox associated leucine zipper 206 240 IPR003106 GO:0006355|GO:0043565
Mepo4g02131 297 CDD bZIP 199 238 - -
Mepo4g02131 297 MobiDBLite consensus disorder prediction 125 155 - -
Mepo4g02131 297 MobiDBLite consensus disorder prediction 96 117 - -
Mepo4g02131 297 MobiDBLite consensus disorder prediction 92 155 - -
Mepo4g02131 297 Gene3D - 154 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02131 Mepo-Chr4 28602954 28605069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02131 47 276 Homeobox Transcription Factor Family AT5G47370 53.909 2.13e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo4g02131 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02131 K09338 - gmx:100779138 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02131 4 28602954 28605069 Mepo4g02131 4 28602954 28605069 ECH
Mepo3g02953 3 39617481 39619327 Mepo4g02131 4 28602954 28605069 PCT