Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02130 ATGGGAGAACAAACATCTCATACAAATGCATGGAACATTGATTTGAATCTGCTTCCGAGTCCAGAACAGTTATCAGGTGTCATGGCAAATAGAACTATGAACTTGATTGATTTGGTTGATCAACCTTCTGATAGAATTACTGAAACTAACAATGGTGGTGTTGCATTGGATAAGACATCAAAGAAGAGGAAGAATGTTGAAGAGGGTGGTGGCAGTGAAGGAAGTGTTTTTGATTGTAATATTTGTTTAGATTTGGCTAAGAATCCTGTGGTTACTTGTTGTGGTCACTTGTTTTGTTGGCCATGCTTGTATAGATGGTTGCATTTAAGATCATCTCAAACTAAAGCATGCCCCGTTTGCAAGGGAGAAGTTACCGATAAGAATGCTATCCCTATATATGGTGGTGAGAATAATGTTGAGGTTCGTCACGAGGATTCAAGCTCTACTCTTCAAATCCCTTCCAGACCTATGGCAAGACGTGTATCTAATGATTCCAGTACAAGTCAAACAATACAATGGAGTGTGGGGCATCTTGGAAGCATACCGGCTGAGTTTGAGGCATCTTGGAGTCTAGACGATGATCATGTATCTTATGATTCCACCAACATGACACCAACAATACATAGGAACGTGGGGCATCATGGAAGCATACCTGTTGAGCCCGAGGCATCTTGGAGTATAGTCGAAGATTATGGCATGCTTGCTGAGTTTGAGCCAGAGCTCGAGGCATCTTGGAGTCTAGACGATGAGCGTGTATCTAATGATTCCACCAACATGACCCCAACAATACATTGGAGCGTGGAGCATCATGGAAGCATGCCTGTTGAGCCCGAGGCATCTTGGAGTACCTTCGAAGATTATGGCATGCTTGTTGAGTTTGAGCAAGAGCTGGTCGAATTTATTTTTGGCAACTTAGGAATTTCTTTTTGA 930 0.4237 MGEQTSHTNAWNIDLNLLPSPEQLSGVMANRTMNLIDLVDQPSDRITETNNGGVALDKTSKKRKNVEEGGGSEGSVFDCNICLDLAKNPVVTCCGHLFCWPCLYRWLHLRSSQTKACPVCKGEVTDKNAIPIYGGENNVEVRHEDSSSTLQIPSRPMARRVSNDSSTSQTIQWSVGHLGSIPAEFEASWSLDDDHVSYDSTNMTPTIHRNVGHHGSIPVEPEASWSIVEDYGMLAEFEPELEASWSLDDERVSNDSTNMTPTIHWSVEHHGSMPVEPEASWSTFEDYGMLVEFEQELVEFIFGNLGISF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02130 309 CDD RING-HC_AtRMA-like 77 121 - -
Mepo4g02130 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 142 IPR013083 -
Mepo4g02130 309 SMART ring_2 79 120 IPR001841 -
Mepo4g02130 309 ProSitePatterns Zinc finger RING-type signature. 94 103 IPR017907 -
Mepo4g02130 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 50 173 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo4g02130 309 ProSiteProfiles Zinc finger RING-type profile. 79 121 IPR001841 -
Mepo4g02130 309 MobiDBLite consensus disorder prediction 144 166 - -
Mepo4g02130 309 Pfam RING-type zinc-finger 79 118 IPR027370 -
Mepo4g02130 309 MobiDBLite consensus disorder prediction 47 71 - -
Mepo4g02130 309 SUPERFAMILY RING/U-box 78 127 - -
Mepo4g02130 309 MobiDBLite consensus disorder prediction 142 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02130 Mepo-Chr4 28582377 28583306 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02130 6 174 C3H Transcription Factor Family AT3G58030 45.614 4.03e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02130 K10666 - mtr:25483535 186.422