Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02129 ATGGGTCGTCGCAAAATTAAAATAGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACTTTCTCAAAGCGTCGGACCGGCTTATTCAAGAAAGCAAATGAATTGTCCATTTTATGCGGAGCTGAAGTCGCTATTGTTGTGTTCTCTCCTGGGGACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATTTGAAACTAAAGCCTAAACGCATGAATTCCTTAGGAAACCCCTCTTCTGATTCTCCCAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGCACAAGTTCAAGAAGGTGAAAAGCAAGCTGAGACTCATGATGAGATTCTGAAGCAAAACGACGTGACAAAACTCTCTGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTTTGATGCTTCTAGCTCAGGATCCAGTGGTTGGAATAAAAGAGTAA 510 0.4059 MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGDNPYSFGHPGVDVVAAKYLKLKPKRMNSLGNPSSDSPNMEKLNLELVEVLAQVQEGEKQAETHDEILKQNDVTKLSELKELRDSYKELQDCIKLRLSDIEISECLMLLAQDPVVGIKE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02129 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo4g02129 169 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Mepo4g02129 169 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Mepo4g02129 169 CDD MADS 2 60 - -
Mepo4g02129 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo4g02129 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo4g02129 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo4g02129 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo4g02129 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo4g02129 169 Coils Coil 90 110 - -
Mepo4g02129 169 Gene3D - 14 81 IPR036879 GO:0003677|GO:0046983
Mepo4g02129 169 PANTHER MADS BOX PROTEIN 3 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02129 Mepo-Chr4 28572649 28573158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02129 1 161 Type I MADS-box Gene Family AT2G34440 43.678 4.51e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo4g02129 SRF-TF 5.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02129 - - mtr:11439559 266.159