Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02128 ATGGGTCGTCGGAAAATTAAGATTGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACATTCTCAAAGCGTCGGACAGGCTTATTCAAGAAAGCGAATGAGTTGTCGATTTTGTGCGGAGCAGAAGTGGCTATTGTTGTGTTCTCTCCAGGTGACAATCCTTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATCTTGAACTAAAGCCTAAATGCAGGAATTTCGAAGGAAACCCCTCTTCTGATTCTCCAAATATGGAAAAATTGAATCTAGAACTTACTGAGGTGTTGGCACAGATCCGAGAAGGTGAAAATCAAGCTGAGACTCATGATGAGATTCTGAAGCAAAATGATGTGACAAAACTCTCCGAGCTTAAAGAATTGAGAGATTCGTACAAAGATCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTATGATGCTTCTAGCTCAGGATCCAATGGTGGGAAGAAAAGCGAAATCGTCAAAAAAGAAAAGAAGAAAAAATTAA 540 0.4056 MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGDNPYSFGHPGVDVVAAKYLELKPKCRNFEGNPSSDSPNMEKLNLELTEVLAQIREGENQAETHDEILKQNDVTKLSELKELRDSYKDLQDCIKLRLSDIEISECMMLLAQDPMVGRKAKSSKKKRRKN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02128 179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo4g02128 179 PANTHER MADS BOX PROTEIN 3 141 - -
Mepo4g02128 179 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Mepo4g02128 179 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Mepo4g02128 179 CDD MADS 2 60 - -
Mepo4g02128 179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo4g02128 179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo4g02128 179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo4g02128 179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo4g02128 179 Coils Coil 90 110 - -
Mepo4g02128 179 Gene3D - 14 81 IPR036879 GO:0003677|GO:0046983
Mepo4g02128 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02128 Mepo-Chr4 28563090 28563629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02128 1 161 Type I MADS-box Gene Family AT2G34440 42.373 1.33e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo4g02128 SRF-TF 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02128 - - mtr:11439559 254.218