Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02127 ATGGGGGAACAAGCATCTCGTAGAATTGCGATGGATATTGATTTGAATCTGGAACCAAATCCTGATCAATTATCATATGCCATCGGTGCTATGAATTTGAATGATATGATCAACCCACCTCTTAATAGAACTAGTAATCTTCTTGATCGTCATACGTGGGAAAATGTTTCCATGGAATTGGATAGGTTTTTAGGTATTTCTCGCAATCCAAGTGTCGAAAGAATTGCGGTAGTACCTCAACCACAACCACAACCACAACCAAGCCTTATCGCACTAAGTGGGGTCGGCCATGCTGAAGTAGCACAAGCTTGTGAAATTAGCAATGTCGGTGTTGCATTGGATAAGAGCGAGGCGAAAAAGGAGAATGTTGATAAGGGTTGTGGTAGTGAAGGAGGTTTCTATGATTGTAATATTTGTTTAGGTTTGGCTAAGGATCCTGTTGTTACTCGTTGTGGTCATTTGTTCTGCTGGCCGTGCTTATATAGATGGTTGCATTTGGGATCATCCGGCAATAAAAAATGTCCTGTTTGCAAGGGGGAAGTTAAGGATAAGAAGGTTATTCCTATATATGGTGGTGGGAATGAGGTCGAGGTTGGTCACGAGGATTCAAGCTCCACTCTTCAAATCCCTCGCAGGCCTAATGCAAGGAGGAAGGATTCGAATGCAAGGCAATCAAGACAAGGGAGAGTGAGGCATCTAGGTCGCGAATTAATGACTATTCAGTAG 726 0.4284 MGEQASRRIAMDIDLNLEPNPDQLSYAIGAMNLNDMINPPLNRTSNLLDRHTWENVSMELDRFLGISRNPSVERIAVVPQPQPQPQPSLIALSGVGHAEVAQACEISNVGVALDKSEAKKENVDKGCGSEGGFYDCNICLGLAKDPVVTRCGHLFCWPCLYRWLHLGSSGNKKCPVCKGEVKDKKVIPIYGGGNEVEVGHEDSSSTLQIPRRPNARRKDSNARQSRQGRVRHLGRELMTIQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02127 241 MobiDBLite consensus disorder prediction 212 233 - -
Mepo4g02127 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Mepo4g02127 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 112 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo4g02127 241 SMART ring_2 136 177 IPR001841 -
Mepo4g02127 241 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Mepo4g02127 241 ProSitePatterns Zinc finger RING-type signature. 151 160 IPR017907 -
Mepo4g02127 241 CDD RING-HC_AtRMA-like 134 178 - -
Mepo4g02127 241 Pfam Zinc finger, C3HC4 type (RING finger) 136 177 IPR018957 GO:0046872
Mepo4g02127 241 SUPERFAMILY RING/U-box 133 191 - -
Mepo4g02127 241 MobiDBLite consensus disorder prediction 199 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02127 Mepo-Chr4 28544410 28545135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02127 93 220 C3H Transcription Factor Family AT2G42030 49.219 1.26e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02127 K10666 - mtr:25483535 407.527