Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02100 ATGGATGCCCGCAAACGAGGGAGGGTTGATGCTGCTGTTAACGGCTCCGTCAAGAAAACCAAACAAGAAATGGACTCAACTGGTGTAGGAAGCAAAACGAAGCCTTGTACCAAGTTTTTCAGTATTGCTGGCTGTCCATTTGGTGAGGGTTGTCACTTCTCACATCATGTTCCCGGCGGTTATAATGCTGTTGCCCAGATGATGAATCTAAAACCTGCTGCACCTCCTAGAAATGTCGCCGCCCCACCACCGGTCTCTAACAATGGTTCTGCCCCACATGCAGTTAAAAGCCGCATATGTAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAGCTCGGTAAACCTTTTGCTCCATCAGTTGATGATCACCGTCCAATGGCACCTACAAATGTTGGTCGTATGCCTGGTCGAGTTGAGGCTCCTTCTGGTCTGGGCGGTACTAGCTTTGGTGCCAATTCCACTGCCAAGATCAGCGTAGAAGCTTCTTTGGCTGGGGCTATCATTGGAAAGGGTGGTGTGCACTCGAAGCAGATATGTCGCCAAACAGGAGTCAAATTTTCAATTCGAGACCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACGAGCAAGTAACATGGTAAAAGATTTACTTTTGACTCTATCAGTGTCTGCCCCACCTAAATCCACCCCAGGAGCTCCTGCTGGCGGTGGCCCAGCCGCACCTGGAAGAAACATCAAGACCAAGCTGTGTGAGAATTTTGCTAAAGGATCTTGCACATTTGGAGAAAGATGTCACTTTGCCCATGGAGCCGCTGAATTGCGAAAGCTAGGAGTCTAA 882 0.4773 MDARKRGRVDAAVNGSVKKTKQEMDSTGVGSKTKPCTKFFSIAGCPFGEGCHFSHHVPGGYNAVAQMMNLKPAAPPRNVAAPPPVSNNGSAPHAVKSRICNKFNSAEGCKFGDKCHFAHGEWELGKPFAPSVDDHRPMAPTNVGRMPGRVEAPSGLGGTSFGANSTAKISVEASLAGAIIGKGGVHSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIARASNMVKDLLLTLSVSAPPKSTPGAPAGGGPAAPGRNIKTKLCENFAKGSCTFGERCHFAHGAAELRKLGV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02100 293 Pfam RNA-binding, Nab2-type zinc finger 35 55 - -
Mepo4g02100 293 Gene3D K Homology domain, type 1 160 258 IPR036612 GO:0003723
Mepo4g02100 293 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 160 234 IPR036612 GO:0003723
Mepo4g02100 293 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 153 IPR045877 GO:0003729
Mepo4g02100 293 MobiDBLite consensus disorder prediction 1 29 - -
Mepo4g02100 293 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Mepo4g02100 293 SUPERFAMILY CCCH zinc finger 259 289 IPR036855 GO:0046872
Mepo4g02100 293 SMART c3hfinal6 96 121 IPR000571 GO:0046872
Mepo4g02100 293 SMART c3hfinal6 30 57 IPR000571 GO:0046872
Mepo4g02100 293 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Mepo4g02100 293 ProSiteProfiles Zinc finger C3H1-type profile. 30 58 IPR000571 GO:0046872
Mepo4g02100 293 Pfam KH domain 167 229 IPR004088 GO:0003723
Mepo4g02100 293 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Mepo4g02100 293 SMART kh_6 163 233 IPR004087 GO:0003676
Mepo4g02100 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 121 IPR000571 GO:0046872
Mepo4g02100 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 284 IPR000571 GO:0046872
Mepo4g02100 293 FunFam Zinc finger CCCH domain-containing protein 89 126 - -
Mepo4g02100 293 ProSiteProfiles Type-1 KH domain profile. 164 228 - -
Mepo4g02100 293 SUPERFAMILY CCCH zinc finger 31 57 IPR036855 GO:0046872
Mepo4g02100 293 CDD KH-I_AtC3H36_like 167 232 - -
Mepo4g02100 293 FunFam Zinc finger CCCH domain-containing protein 255 290 - -
Mepo4g02100 293 Gene3D - 259 290 - -
Mepo4g02100 293 Gene3D - 89 126 - -
Mepo4g02100 293 SUPERFAMILY CCCH zinc finger 93 125 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02100 Mepo-Chr4 28038831 28043271 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo4g02100 KH_1 2.2e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02100 - - gmx:100817463 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02931 3 39408680 39413083 Mepo4g02100 4 28038831 28043271 PCT