Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02099 ATGAATTCCAGTGAGAAACTGGCTACCGTACAAACCCAGGCAGAAGAGCAGGGGGAAGCAGCTTGTGAAAATTCAGAGGAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGTACAACCAACTGGAAACACTTTCTCCACAACTAAAGTGCGTACAAAATTTCCCTTTCTACTCAAGTACTCTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACCATTATGACTATAGCTTTGCTTGCACATCTTGCCTGCGAAAAGGGGATTTGGGGTCCACATCTAATTGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCGTTCAAAATTTTGACCTATTTCGGAAGCGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTGTGCATAACAACTTATAGATTAGTTATCCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATTCGAAAAGACGAATTCTGTTGACCGGTACACCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTTGTAATCCTATATCAGGAATGGTCGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTAGATCGCCTGCATAATGTCCTTCGTCCGTTCTTACTCCGCCGATTGAAGAGAGATGTAGAAAAGCAACTTCCAATGAAACATGAGCATGTCATATACTGTAGGCTGTCAAAGAGGCAGAGGAATTTGTACGAAGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCGAATGCCAATTTTTTTGGGATGATTAGTATCATCATGCAACTTCGCAAGGTTTGTAATCATCCTGACCTATTTGAGGGCCGTCCAATCGTCAGTTCTTTTGATATGTGTGGCATTCATACTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGCTCCTTTTCTACAGTTGACTTAGAAGGTTTGGGTCTTCTATTTACTCATCTTGACTACAGCATGACATCTTGGGAGAGTGATGAAGTGCAAGCTATTGAGACCCCTGCAACTTTAATTATGGAACGCACTGATAGGGCTGACCTGGAAGTAATTAAGCCCGGACTGAAATGTCAGAAAAAGCAGTTAGGAACAAACATTTTTGAAGAGATTCAAAAGGCAATTTGGGAAGAGAGGATAAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGACCCATCTACTCAACGACTCTAAGGGACCTTGTTACCATAAGGCATCCTGTATATGATATTCATCATAAGAAGGCAAAACCTGTTTCATACTTGTTCCCATCAAAACTGGCTGACATTGTTCTCTCCCCAGTTGAACGATTTCAAAGGATGATTGATGTGGTTGAAAGTTTCATGTTTGCGATTCCTGCCGCCCGAGCATCCCCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACAACAGTGTTTCTGCACCCATCTTACAAGCAGCGATGCTCTGATATTCTGTCACCACTATTGTCACCCATCAGGCCCGCAATTGTTCGTCGGCAAGTATATTTCCCAGACAGGCGACTTATACAATTTGACTGTGGAAAATTGCAGGAGCTAGCGATTTTACTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAAATGACTAAGATGCTTGACATATTAGAAGCCTTCATTAATTTGTATGGTTATACTTACATGCGCTTAGATGGATCAACCCAACCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACCCCAAATATTTTCTTTTCATTTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAAGCTCAAGATCGGTGCCACAGAATTGGCCAGACGCGTGAAGTCCATATATATCGATTGATTAGTGAGAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGCGCACTTGATGATCTGGTTATACAGAGTGGGGGTTATAATACTGAGTTCTTTAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAACACTCTCAATTAAAGATACGCCGAAGGAGAGAAACCAGAACAGTGGAGAAGTTTCTGTAACTAATGCAGATGTAGATGCTGCATTAAAACATGTTGAAGATGAGGCAGATTATATGGCCCTGAAGACACGTGAACTGGAAGAAGCTGTGGATAACCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGACGAGGATGAGTATGTAAATGAGGATGATGAGCCTCAAGAGTTAGGTGAATCTGTCTCCAATTTGAATAAAGAGAATGAATTAATGTTAAATGGAGGTGATCCTAACGAAGATAAACTACCCACTGTTGTTGCCAAGGATGATGATGTTGACATGCTGGCAGATGTGAAACAGATGGCAGAAGCTGCAGCTGCAGCTGGACAGGCTTTATCAGCCTTTGAGAATGAGCTACGCCCTATTGACCGATACGCCATTCGTTTTCTAGAACTGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGCCAGGATTGAGGACACTGAGTGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAAGCCGAAATTGACGAAGATGAGGAGCCTCTCGTATATGAAAGCTGGGATGCTGATTTTGCAACAACGGCTTATCGGCAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAATATGAAGCTAAACTGAAAGAGGAAGCTGAAGAAGAGAAAAACAGGACTCAAGCACCAAGTGAGTCAAAGCCCAAGCCTAAAAAGAAACCAAAGAAAACAAAGTTCAAATCTCTGAAGAAAGGATCTCTAACCTCTGGTGTAAGAACTGTAAAAGACGAGCTACGAGCAGTGCCAATGGTCATAGATGATGATGATGTTGTCACCAGTCCTGATTTTGTGTCTCCAAGTTCAAGTATGCATAAAAAACGCAAGAAGTCTAAATTAACAGCTGACGGTGAAGAAGAAAAGAGATCTAAGAAGTCCAAAAAGTCCAAGAGGGATCTTCTTGACATCTATGATTCAGATTTAGAATCCAACTCATTAGATATGCAGGATGAACATGCAGAATCAGATCCATATAAAAGTCTGGTTGTGTCGGAACAGAAAACAGTTGGCAGGAGTAGGATGGGAGGAAAAATAACCATCACTCCAATGCCTGTGAAACGTGTGTTTATAATAAAATCAGAAAAACTGAAGAAGGGAAATATTTGGTACAAAGATTGTATTCCATCAGCTGATTTTTGGTTGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTCATGAATATGGTCCTAACTGGAGCTTTGTTAGTGAAATCCTTTATAGCATGACTGCTGGTGGGGCATATAGGGGGAGATTTCGTCATCCTGTCCATTGTTGTGAGAGGTTCAGAGAATTATTCCAAAAATACGTCTTGTTCTCTATGGACAATGCAAATCATGAGAAAATCAACTCTACAGCCTCTGGAAAGGCTCTTAAAGTAACAGAGGATAACATTCGGATATTGTTAGATGTTGCTTCTGAGCAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTTTGCGTTGCTTTCTTCTGTCTGGAAGGTGGGGTCATGTGTTGACCGCAGGCAAAATCCACCTGCCACTTGCAATGGTCTCTATTTCGATCAAAGTTTTTTCACTTCAATTGGCCAGCACTCACAAAATCCCCCGAACAAACCCTATGAAAGGATGACGTTTGCTAATTCAACCCAGAGCAAGAAGTTAATTGCAGCCGCACTGGATGACATGAGAAGTAGGCCAGAGAATGACAACATATTCCTCTCTAACCAGGGTGAAGACATGCCGGTGAGTGCAGATCAGGTGGATATAACTCTGGAGTTCCCGAAAGAGGAAAGTGATTCCTTATCCTCATTTCCATCTGTTATAAAGTTATCAATAAAAGGGGATGAAGCGCCACCGTCTTTAAAGCACACAAGAGATGATCATCTTAAAATGTGTTATTCTGCTGCTGAGAATCGTTTCAGGGATATAACAAAAGCTTGTGAAGAAGACAGTTCTGGATGGGCTTCACCGACAAATGATGCAAGGCCTCGACCTGGTTCCAAGATACAATCTTCTGGAAAGCAAAGGTCTTCCATCTCCGACATTACTAAGCTGTCAAGGTCAAAGACCAAAAGAGCTTCTGTGGATTCTAATGAAATGCATCGCCATCAGGCTGAGTTATTGCCGCCAGTGCCGTCGCTTCAGGAACTGACACTGGATCTCCGTTCATCCACTATGGACGAATTTGGATTTAACATGGATAACAATTTCACCTTTGATTTGAATGAGGAAAGTTCATTGGAAAGGGAAAATTTTGGAGTGGTCCCCCATGATTATGTAGCTGAGTTAATCCCAGGCCTTGATGATTGTATAGCATTCTCTGAATATACTGATATTAGATAA 4776 0.416 MNSSEKLATVQTQAEEQGEAACENSEERESEDIIADAAAAARSVQPTGNTFSTTKVRTKFPFLLKYSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIHTQLSSSICSMLLPSSFSTVDLEGLGLLFTHLDYSMTSWESDEVQAIETPATLIMERTDRADLEVIKPGLKCQKKQLGTNIFEEIQKAIWEERIREAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTIRHPVYDIHHKKAKPVSYLFPSKLADIVLSPVERFQRMIDVVESFMFAIPAARASPPVCWCSKSETTVFLHPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKDTPKERNQNSGEVSVTNADVDAALKHVEDEADYMALKTRELEEAVDNQEFTEEASGRLDEDEYVNEDDEPQELGESVSNLNKENELMLNGGDPNEDKLPTVVAKDDDVDMLADVKQMAEAAAAAGQALSAFENELRPIDRYAIRFLELWDPIIDKAALESEARIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKNRTQAPSESKPKPKKKPKKTKFKSLKKGSLTSGVRTVKDELRAVPMVIDDDDVVTSPDFVSPSSSMHKKRKKSKLTADGEEEKRSKKSKKSKRDLLDIYDSDLESNSLDMQDEHAESDPYKSLVVSEQKTVGRSRMGGKITITPMPVKRVFIIKSEKLKKGNIWYKDCIPSADFWLPQEDAILCAVVHEYGPNWSFVSEILYSMTAGGAYRGRFRHPVHCCERFRELFQKYVLFSMDNANHEKINSTASGKALKVTEDNIRILLDVASEQANRELLLQKHFFALLSSVWKVGSCVDRRQNPPATCNGLYFDQSFFTSIGQHSQNPPNKPYERMTFANSTQSKKLIAAALDDMRSRPENDNIFLSNQGEDMPVSADQVDITLEFPKEESDSLSSFPSVIKLSIKGDEAPPSLKHTRDDHLKMCYSAAENRFRDITKACEEDSSGWASPTNDARPRPGSKIQSSGKQRSSISDITKLSRSKTKRASVDSNEMHRHQAELLPPVPSLQELTLDLRSSTMDEFGFNMDNNFTFDLNEESSLERENFGVVPHDYVAELIPGLDDCIAFSEYTDIR 1591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 1 29 - -
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 1094 1114 - -
Mepo4g02099 1591 Gene3D - 582 828 IPR027417 -
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 1 19 - -
Mepo4g02099 1591 CDD DEXQc_SRCAP 68 290 - -
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 1462 1495 - -
Mepo4g02099 1591 FunFam Photoperiod independent early flowering protein 1192 1253 - -
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 1073 1114 - -
Mepo4g02099 1591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 290 IPR027417 -
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 1015 1048 - -
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 1459 1517 - -
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 832 859 - -
Mepo4g02099 1591 Pfam Helicase conserved C-terminal domain 612 722 IPR001650 -
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 844 858 - -
Mepo4g02099 1591 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 580 829 - -
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 1496 1514 - -
Mepo4g02099 1591 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 314 379 - -
Mepo4g02099 1591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 781 IPR027417 -
Mepo4g02099 1591 Coils Coil 1000 1024 - -
Mepo4g02099 1591 SMART helicmild6 639 722 IPR001650 -
Mepo4g02099 1591 MobiDBLite consensus disorder prediction 1015 1032 - -
Mepo4g02099 1591 Gene3D - 314 393 - -
Mepo4g02099 1591 CDD SF2_C_SNF 598 733 - -
Mepo4g02099 1591 Gene3D - 37 313 IPR038718 -
Mepo4g02099 1591 SMART ultradead3 64 257 IPR014001 -
Mepo4g02099 1591 PANTHER HELICASE SRCAP-RELATED 11 1487 - -
Mepo4g02099 1591 Pfam SNF2-related domain 85 357 IPR000330 GO:0005524|GO:0140658
Mepo4g02099 1591 Gene3D - 1193 1253 - -
Mepo4g02099 1591 FunFam Photoperiod-independent early flowering 1 38 313 - -
Mepo4g02099 1591 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 80 245 IPR014001 -
Mepo4g02099 1591 Pfam Myb-like DNA-binding domain 1196 1251 - -
Mepo4g02099 1591 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 613 763 IPR001650 -
Mepo4g02099 1591 Coils Coil 949 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02099 Mepo-Chr4 28022120 28031760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02099 559 752 RAD5 or RAD16-like Gene Family AT5G43530 30.986 4.81e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo4g02099 SNF2_N 5.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02099 K11661 - gmx:100794898 2460.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02099 4 28022120 28031760 Mepo4g02099 4 28022120 28031760 ECH