Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02080 ATGAGTTCAGGTTTTGTACCTTCTCCCTCTTCACCACCTAACTCATCTACCGAGTTTCTTGATGGATTAAAGTTTGGTCAAAAAATCTACTTTGAAGATGCAACAAGTACTGTTGTAGTAGCAGCTTCTCAAATCAAACCTAATGCTGTTGGTGTTGGTGGCTCTTCTTCATCTTCAGGAATGAAGAAAGGAAATAATCATCCACCTAGGTGTCAAGTTGAAGGTTGTAAAGTAGATCTGAGTGGTGCTAAGGCTTATTATTCTAGACATAAAGTTTGTTGCATGCATTCAAAATCTCCTTCTGTTGTTGTTTCTGGTTTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGAAGTTGCCGCAGGCGTTTAGCTGGCCATAACGAAAGGCGGAGAAAGCCCCAACCGAGGTCCTTTGTAACCTCGCGTTTTCCCAGACTCTCCTCACCTACTTTTGGTAACAATGGCCAAGGTAACAATGACTTTCTGATGGAATGTGCTTCATACCAAAAAATTTCTATGGGAAATGCATTTTCAACTCTGAGATCAGCCGAGCCGGTTCCCGGTGATCAAACAACACAATTTACCTGGCAGAACAACTCATCGACACCGTCGGACTTTTTCCTGCAAGGAACAAACTTCCATGGTCCTCCTACCAGACATCATCCAATAATGGATAACTACAATGAAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTATTCTAGAAACACAACAACACCAAGTGTTGAGATGAACAACTTGTTGAATTTCAATGGTTCAATTACTCCACAATCTTCTCAAGTTGTACCCAATTATCAGCTTCAAACAAATGCTTCTTCTTGGTTTTTAAAGGGCGTTGATTCTCGTAACTGTTTGTCCCCCGAGGATGTTCCTGATCTTGGTCTCGGTCAAAATTTGCAGGCTATTCATAGCGATCTTCGTGGTGAGCTTGATGTGTCACAAGGCAAGAGGCAATAG 1032 0.4205 MSSGFVPSPSSPPNSSTEFLDGLKFGQKIYFEDATSTVVVAASQIKPNAVGVGGSSSSSGMKKGNNHPPRCQVEGCKVDLSGAKAYYSRHKVCCMHSKSPSVVVSGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQPRSFVTSRFPRLSSPTFGNNGQGNNDFLMECASYQKISMGNAFSTLRSAEPVPGDQTTQFTWQNNSSTPSDFFLQGTNFHGPPTRHHPIMDNYNEVTDSSCALSLLSNQTWYSRNTTTPSVEMNNLLNFNGSITPQSSQVVPNYQLQTNASSWFLKGVDSRNCLSPEDVPDLGLGQNLQAIHSDLRGELDVSQGKRQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02080 343 SUPERFAMILY SBT domain 69 150 IPR036893 GO:0003677|GO:0005634
Mepo4g02080 343 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Mepo4g02080 343 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 47 261 IPR044817 GO:0003677
Mepo4g02080 343 Pfam SBP domain 71 144 IPR004333 GO:0003677
Mepo4g02080 343 MobiDBLite consensus disorder prediction 152 167 - -
Mepo4g02080 343 FunFam Squamosa promoter-binding-like protein 14 62 132 - -
Mepo4g02080 343 Gene3D - 62 132 IPR036893 GO:0003677|GO:0005634
Mepo4g02080 343 MobiDBLite consensus disorder prediction 135 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02080 Mepo-Chr4 27759379 27763289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02080 23 280 SBP-box Gene Family AT3G57920 45.149 5.23e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo4g02080 SBP 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02080 - - gmx:100807165 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02080 4 27759379 27763289 Mepo4g02080 4 27759379 27763289 ECH
Mepo3g02923 3 39322639 39326073 Mepo4g02080 4 27759379 27763289 PCT