Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02072 ATGAAGCATTTTTTTTCTTCTGCTTCTTCTTCTTCATCTCACTCTCATCACAAACCAAAAAGGAGTGTTGTTGATCATGGTGCAAAACTTCACAAATGTGATTTGTGTGACAGAGAATTCACCACTGGTAATGCCCTCGGCGGCCACAAAGCATTCCATAGTGGCAACAACTTTCATCTAGGTAAAATCAACAAAAACAAACATGTTGATGGTATTAAGATCAACCATTCATGTGTTCTTTGCAGCAAGGCTTTTTCATCTGTCAATGCATTGAATGGGCACATGAAATCGCACAGCCCATACGGATCGAAAAAGGGTAGTAAGAATTATGATCAAGATCAATTTCCACCAATTGATTTGAGAAAGTATTTGCCACCAATGAGGTATGTGACCAAGAAACGGACCTGGAATTATGTTATTGATGTTGAAGCTGATGTTGCTGAAGCAATGCTGGATATGTCAGAGCGATCACCTAACAACCTTGATGTGAATCACCGTGTCAGGAGAAGGATCAAAATTCGCCGCAATGTGGGTGGGAATGGGAAGATCAAAGATCAAGGTGGTGTGGTAAAACATTGTATTGATGAAACAATTGTGAGAGAGAAGGATAAAATCAATGAAAAGAACAAGTTTCTGGTGAGGTTAAAGATTCCGAATGGCCTAGTCATTCAAAAATCAGAAGCTTCCAATGATGATAATGAAGAGAACAACAACACAGATGAACCAGATGAGGAACCAACTCATGAATTGGGGTCAAATGTTGTTCGAGATTTCGATTTGAATGAGCTGCCAGTGGATGATGATGCAGATGAAACCGCTCATTAG 825 0.3976 MKHFFSSASSSSSHSHHKPKRSVVDHGAKLHKCDLCDREFTTGNALGGHKAFHSGNNFHLGKINKNKHVDGIKINHSCVLCSKAFSSVNALNGHMKSHSPYGSKKGSKNYDQDQFPPIDLRKYLPPMRYVTKKRTWNYVIDVEADVAEAMLDMSERSPNNLDVNHRVRRRIKIRRNVGGNGKIKDQGGVVKHCIDETIVREKDKINEKNKFLVRLKIPNGLVIQKSEASNDDNEENNNTDEPDEEPTHELGSNVVRDFDLNELPVDDDADETAH 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02072 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Mepo4g02072 274 SMART c2h2final6 76 98 IPR013087 -
Mepo4g02072 274 SMART c2h2final6 31 53 IPR013087 -
Mepo4g02072 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 99 IPR013087 -
Mepo4g02072 274 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Mepo4g02072 274 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Mepo4g02072 274 Gene3D Classic Zinc Finger 28 98 - -
Mepo4g02072 274 MobiDBLite consensus disorder prediction 224 274 - -
Mepo4g02072 274 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 10 59 IPR044653 GO:0003700
Mepo4g02072 274 MobiDBLite consensus disorder prediction 1 23 - -
Mepo4g02072 274 SUPERFAMILY beta-beta-alpha zinc fingers 29 98 IPR036236 -
Mepo4g02072 274 Pfam C2H2-type zinc finger 76 98 - -
Mepo4g02072 274 Pfam C2H2-type zinc finger 31 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02072 Mepo-Chr4 27454372 27455196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02072 32 106 C2H2 Transcription Factor Family AT2G45120 37.500 1.17e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g02072 zf-C2H2_6 1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02072 - - cam:101497742 132.88