Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g02012 ATGGAACAAACCACGTTCGAGTCGATTCAATTCAACGAAGAAATTCAAGGAATCATGGCTCCGGCGACGGAAACAGCGAACTCTTTCACCGCACTTCTTGAACTACCACCAACGCAGGTTGTTGAGCTTCTTCACTCGTCGGAGATTACCGGAAAACCGCCGAAACCCTATCCACTGACTTGCAACACCGGTAATTTAACTTTCCCTTCCAACGCCGCGTTGGTTGAACGCGCCGCTAGATTCTCCGTTTTCGCCGGAGAAAATTCCACAAACTCGCCGAACTTGCCGCAGGTGAAGGATGAGCTACCGGAGACTGAAGAAGGTGGATGTGTCTCTGATCCAACGGTTGAAAACACGAATTCCAAGAGTGCGAAGAGAAAGGAACGAGAGAAGAAGGTGAAATTGTCGTCTAAGAAGAATAAGAGTATCGCCGCCGACAAGAATTCCGGTAACGGTGAGGAGCTTCCGTACGTTCACGTTCGAGTTCGACGAGGTCAAGCTACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAACTGTTGCAAGAGCTGGTCCCAGGTTGCAACAAGATATCAGGAACAGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAATAATTGATTTCAACCTTGACAGCATATTAGCTGCAGAAGGAATGTCTCTCATGGACAGTAACTTCCCTAACACAGTTTCACCCGCTGTGTGGCCAGAAATCCCACACAATGGAAACAGACAGCAATTTCAGCAACCGTGGCAATCTGATGCATTCCACCAACCACTTTGGGGGAGAGAAGAAAACAACCCTAATTTCATGACCCCGGAAAACTCACTTCTGAGTTATGACTCATCGGCAAATTCAGTTTGTGAGAGAAATGTGGTGCAAGGTGATCCAAATCAAGCTTATCATGATTCCTAA 999 0.4625 MEQTTFESIQFNEEIQGIMAPATETANSFTALLELPPTQVVELLHSSEITGKPPKPYPLTCNTGNLTFPSNAALVERAARFSVFAGENSTNSPNLPQVKDELPETEEGGCVSDPTVENTNSKSAKRKEREKKVKLSSKKNKSIAADKNSGNGEELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPIIDFNLDSILAAEGMSLMDSNFPNTVSPAVWPEIPHNGNRQQFQQPWQSDAFHQPLWGREENNPNFMTPENSLLSYDSSANSVCERNVVQGDPNQAYHDS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g02012 332 FunFam transcription factor bHLH48-like isoform X1 163 235 - -
Mepo4g02012 332 MobiDBLite consensus disorder prediction 86 152 - -
Mepo4g02012 332 CDD bHLH_AtBPE_like 156 241 - -
Mepo4g02012 332 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Mepo4g02012 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 235 IPR036638 GO:0046983
Mepo4g02012 332 SMART finulus 172 222 IPR011598 GO:0046983
Mepo4g02012 332 Gene3D - 163 234 IPR036638 GO:0046983
Mepo4g02012 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983
Mepo4g02012 332 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 92 310 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g02012 Mepo-Chr4 26369832 26375914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g02012 2 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.796 2.05e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo4g02012 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g02012 - - psat:127091567 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g02012 4 26369832 26375914 Mepo4g02012 4 26369832 26375914 ECH
Mepo3g02898 3 39119842 39125223 Mepo4g02012 4 26369832 26375914 PCT