Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01990 ATGGCAGACCCTTACTCAAATTTCTTCTCATCCAATTTCTTCCAATTCAATAATAATCCAACAAACCATTACCCTTCTTCTTCAAAACCTTCATCCCATCACCACCACCCTAATTATCTTCACAATTTCATTAACCACACAACTTTCAACAACAACAACACCTTTTTCCACTACCATCATCATCATCATCACCATCTTCAAACTACAACTGCATCTAGTTCTTCCTCTTCCTCTTCTTCTTTTCCTTCATATTCTTCACCATCTTCCCCTCCTTTAAAAGAAGCCCTTCCACTTTTGAGTCTTATCCCTACAAAAAAGGAAGAATATGAAGATGAGGTACAAAATCAACATCAACAACATCACCATCATCATCATCAATCTTGCACTTCAATGGATGTGGATGATTGTAGTCATAAAGTAGAAGAAAAAGAAGATCATGAAGGTGTGACTGTTGCACTTCATATAGGGTTACCAAGCCCTAGTTCTTCTGAGATTGCAACTATGATGATGTCTTCATCTTCTGATATGATGATTAATGAAAGAGATCAATTACAAGGAGATGTTACTATTAGTGATGATTCCTCTTCAGCTGGATTTTTGAGTACCAATAGATCACTTAACAAGGGTCAGTATTGGATCCCTACTCCTTCTCAGATTCTTATTGGACCTACACAATTCTCTTGTCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGTACACAACCAACAGGTATGCTAAGGCTTCCTTGCTATTGTTGTTCACCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCATTAAAAGATTTCAGAACACTTCAAACACATTATAAAAGGAAACATGGGATCAAGCCTTTTATGTGTAGAAAATGTGGTAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAACTGTGGAAAGCTTTGGTATTGTCTTTGTGGTTCTGATTTTAAGCATAAGAGGTCACTTAAAGATCATATAAGAGCTTTTGGGAGTGGTCATGCTGCTTATGGAATTGATGGTTTTGAAGAAGAGGATGAACCTGCTTCTGAAGTTGAACAAGATAATGAATCCACTCAGACTCAGTAG 1170 0.3803 MADPYSNFFSSNFFQFNNNPTNHYPSSSKPSSHHHHPNYLHNFINHTTFNNNNTFFHYHHHHHHHLQTTTASSSSSSSSSFPSYSSPSSPPLKEALPLLSLIPTKKEEYEDEVQNQHQQHHHHHHQSCTSMDVDDCSHKVEEKEDHEGVTVALHIGLPSPSSSEIATMMMSSSSDMMINERDQLQGDVTISDDSSSAGFLSTNRSLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDGFEEEDEPASEVEQDNESTQTQ 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01990 389 Gene3D Classic Zinc Finger 287 364 - -
Mepo4g01990 389 MobiDBLite consensus disorder prediction 109 130 - -
Mepo4g01990 389 PANTHER ZINC FINGER PROTEIN WIP2 58 384 IPR043584 GO:0003700|GO:0010468
Mepo4g01990 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 330 IPR013087 -
Mepo4g01990 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Mepo4g01990 389 MobiDBLite consensus disorder prediction 67 94 - -
Mepo4g01990 389 SUPERFAMILY beta-beta-alpha zinc fingers 295 330 IPR036236 -
Mepo4g01990 389 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Mepo4g01990 389 SMART c2h2final6 310 330 IPR013087 -
Mepo4g01990 389 SMART c2h2final6 226 248 IPR013087 -
Mepo4g01990 389 Gene3D Classic Zinc Finger 225 248 - -
Mepo4g01990 389 MobiDBLite consensus disorder prediction 68 90 - -
Mepo4g01990 389 FunFam Zinc finger protein WIP2 279 361 - -
Mepo4g01990 389 MobiDBLite consensus disorder prediction 20 39 - -
Mepo4g01990 389 MobiDBLite consensus disorder prediction 370 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01990 Mepo-Chr4 26040454 26043880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01990 1 389 C2H2 Transcription Factor Family AT3G57670 59.420 3.69e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g01990 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01990 - - tpra:123897861 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01990 4 26040454 26043880 Mepo4g01990 4 26040454 26043880 ECH
Mepo4g01990 4 26040454 26043880 Mepo6g03992 6 52147154 52149822 ECH
Mepo3g02887 3 39011342 39014042 Mepo4g01990 4 26040454 26043880 PCT