Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo4g01990 | ATGGCAGACCCTTACTCAAATTTCTTCTCATCCAATTTCTTCCAATTCAATAATAATCCAACAAACCATTACCCTTCTTCTTCAAAACCTTCATCCCATCACCACCACCCTAATTATCTTCACAATTTCATTAACCACACAACTTTCAACAACAACAACACCTTTTTCCACTACCATCATCATCATCATCACCATCTTCAAACTACAACTGCATCTAGTTCTTCCTCTTCCTCTTCTTCTTTTCCTTCATATTCTTCACCATCTTCCCCTCCTTTAAAAGAAGCCCTTCCACTTTTGAGTCTTATCCCTACAAAAAAGGAAGAATATGAAGATGAGGTACAAAATCAACATCAACAACATCACCATCATCATCATCAATCTTGCACTTCAATGGATGTGGATGATTGTAGTCATAAAGTAGAAGAAAAAGAAGATCATGAAGGTGTGACTGTTGCACTTCATATAGGGTTACCAAGCCCTAGTTCTTCTGAGATTGCAACTATGATGATGTCTTCATCTTCTGATATGATGATTAATGAAAGAGATCAATTACAAGGAGATGTTACTATTAGTGATGATTCCTCTTCAGCTGGATTTTTGAGTACCAATAGATCACTTAACAAGGGTCAGTATTGGATCCCTACTCCTTCTCAGATTCTTATTGGACCTACACAATTCTCTTGTCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGAGGTACACAACCAACAGGTATGCTAAGGCTTCCTTGCTATTGTTGTTCACCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCATTAAAAGATTTCAGAACACTTCAAACACATTATAAAAGGAAACATGGGATCAAGCCTTTTATGTGTAGAAAATGTGGTAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAACTGTGGAAAGCTTTGGTATTGTCTTTGTGGTTCTGATTTTAAGCATAAGAGGTCACTTAAAGATCATATAAGAGCTTTTGGGAGTGGTCATGCTGCTTATGGAATTGATGGTTTTGAAGAAGAGGATGAACCTGCTTCTGAAGTTGAACAAGATAATGAATCCACTCAGACTCAGTAG | 1170 | 0.3803 | MADPYSNFFSSNFFQFNNNPTNHYPSSSKPSSHHHHPNYLHNFINHTTFNNNNTFFHYHHHHHHHLQTTTASSSSSSSSSFPSYSSPSSPPLKEALPLLSLIPTKKEEYEDEVQNQHQQHHHHHHQSCTSMDVDDCSHKVEEKEDHEGVTVALHIGLPSPSSSEIATMMMSSSSDMMINERDQLQGDVTISDDSSSAGFLSTNRSLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGIDGFEEEDEPASEVEQDNESTQTQ | 389 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo4g01990 | 389 | Gene3D | Classic Zinc Finger | 287 | 364 | - | - | |
Mepo4g01990 | 389 | MobiDBLite | consensus disorder prediction | 109 | 130 | - | - | |
Mepo4g01990 | 389 | PANTHER | ZINC FINGER PROTEIN WIP2 | 58 | 384 | IPR043584 | GO:0003700|GO:0010468 | |
Mepo4g01990 | 389 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 310 | 330 | IPR013087 | - | |
Mepo4g01990 | 389 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 226 | 253 | IPR013087 | - | |
Mepo4g01990 | 389 | MobiDBLite | consensus disorder prediction | 67 | 94 | - | - | |
Mepo4g01990 | 389 | SUPERFAMILY | beta-beta-alpha zinc fingers | 295 | 330 | IPR036236 | - | |
Mepo4g01990 | 389 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 228 | 248 | IPR013087 | - | |
Mepo4g01990 | 389 | SMART | c2h2final6 | 310 | 330 | IPR013087 | - | |
Mepo4g01990 | 389 | SMART | c2h2final6 | 226 | 248 | IPR013087 | - | |
Mepo4g01990 | 389 | Gene3D | Classic Zinc Finger | 225 | 248 | - | - | |
Mepo4g01990 | 389 | MobiDBLite | consensus disorder prediction | 68 | 90 | - | - | |
Mepo4g01990 | 389 | FunFam | Zinc finger protein WIP2 | 279 | 361 | - | - | |
Mepo4g01990 | 389 | MobiDBLite | consensus disorder prediction | 20 | 39 | - | - | |
Mepo4g01990 | 389 | MobiDBLite | consensus disorder prediction | 370 | 389 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo4g01990 | Mepo-Chr4 | 26040454 | 26043880 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo4g01990 | 1 | 389 | C2H2 Transcription Factor Family | AT3G57670 | 59.420 | 3.69e-143 | 410 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Mepo4g01990 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo4g01990 | - | - | tpra:123897861 | 569.311 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Mepo4g01990 | 4 | 26040454 | 26043880 | Mepo4g01990 | 4 | 26040454 | 26043880 | ECH | |
Mepo4g01990 | 4 | 26040454 | 26043880 | Mepo6g03992 | 6 | 52147154 | 52149822 | ECH | |
Mepo3g02887 | 3 | 39011342 | 39014042 | Mepo4g01990 | 4 | 26040454 | 26043880 | PCT |