LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo4g01938	ATGGGAGATAGAGAGAGTTGCAACAGTAGAGCTTTGATCAATTGTGGATGGAGTCGTGGTCGAATTGAGAGTCTCAAAATTGAAGTATACAATGAGATTCTTAATAGACTAAGGGAATTGGATGTCTCTGAGGCCACACTTCCTTATTTTGAAGATGAACTTTGGGGGCACTTCAATAGCCTTCCAACTAGGTATGCACTGGAAATGAATGTTGAGAAGGCCCAAGATGTTCTTATGCATAAAAGGTTACAACATATGGCACGAACTATTTCTAGTACACCTGCAATTGAAGTTCGCCTCTTCCAGGATCGTTCTACTTCAGGTGTACATTCTAGCAAATCCCTTCATTCCAACTTACAAAAAGAAACCAGTCTCCAAGACACTGATATTCAATGCAACATGAGGCATGATTATGTGAAAATTGACACATCCTTTTCTTCTATAAAACCAATGCATGAAATCACAATTTCAACTAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAACATTCAAGAAGCACATGCCTTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTAGTTGATGGTTGGGCAGGTCAGGATATTGAGAGCCTCAAGCATGAAGTGACAAAGAAAATGCAGAAACTCGAGGAAGATCAATGGTTACCCCTGCACCTTTTCCCTAAGGAGACTGGGACACTTAAACATATTCCAACAAAGAATATTCCAACAAAGAAAATTAAGAAACTCGAGAAGCAGCCATGGTGCAGTCTTCCTAAGGAGAGACCAGAGAAAATTGGAATGAACTATATCTTTAACCATGTAAACAAACCCATCAGTAGAAATGATATATGGGAAATTGATGCAAGTTGTTTAAAATATGAGAAGAAAATTGCATGTGGATCAGTCAGTGATTTGTATAAAGGCACTTACATTAATCAAGATGTGGCTATCAAAGTATTTAAGAAAGGTAGCCTGAATGAAAATATGCACAGGGAGTTTTCTCAGGAAATCTTTATCCTAAGTAAAATTCAGCACAAGAATGTTATCAAATTTATTGGTGCAGGTACAAAACCAAGTTTTCATCTTGTCACAGAATATATGCCTCGTGGAAATATGTATGACTTTCTGCATATACAGAAGGTGGTGTTTACTCTTCCTTCTTTGCTCAAAGTAGCAATTGATATCTCCCAAGGAGTGGCTTATTTGCATCAAAACAACATTATACATCGAGACCTCAAAACTGCTAATCTTTTGATGGATGAGAAAGGGGTAGTCAAAGTTGCTGATTTTGGTGTAGCCAGATTGCAAAATCAATCTGGTATCATGACTGCGGAAACTGGAACGTACCGGTGGATGGCTCCAGAGGTTATTGAGCATAAGCCATATAACCAGAAAGCTGATGTTTTCAGCTTTGGGATTATCATTTGGGAGCTGCTCACAAGAAAGCTTCCGTATGAAGATTTATCCCCATTACAAGCAGCAGTTGGAGTAGTACATAAGGGTATCATATCGTATCACAAAAGAGAATTCAAGGATGACAAACCGCTGTCACTCACTGGATTTGCAAGATAA	1587	0.3863	MGDRESCNSRALINCGWSRGRIESLKIEVYNEILNRLRELDVSEATLPYFEDELWGHFNSLPTRYALEMNVEKAQDVLMHKRLQHMARTISSTPAIEVRLFQDRSTSGVHSSKSLHSNLQKETSLQDTDIQCNMRHDYVKIDTSFSSIKPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDIESLKHEVTKKMQKLEEDQWLPLHLFPKETGTLKHIPTKNIPTKKIKKLEKQPWCSLPKERPEKIGMNYIFNHVNKPISRNDIWEIDASCLKYEKKIACGSVSDLYKGTYINQDVAIKVFKKGSLNENMHREFSQEIFILSKIQHKNVIKFIGAGTKPSFHLVTEYMPRGNMYDFLHIQKVVFTLPSLLKVAIDISQGVAYLHQNNIIHRDLKTANLLMDEKGVVKVADFGVARLQNQSGIMTAETGTYRWMAPEVIEHKPYNQKADVFSFGIIIWELLTRKLPYEDLSPLQAAVGVVHKGIISYHKREFKDDKPLSLTGFAR	528

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo4g01938	528	SUPERFAMILY	ACT-like	151	222	IPR045865	-
	Mepo4g01938	528	Pfam	Protein tyrosine and serine/threonine kinase	296	498	IPR001245	GO:0004672\|GO:0006468
	Mepo4g01938	528	SMART	serkin_6	296	521	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo4g01938	528	ProSiteProfiles	ACT domain profile.	153	231	IPR002912	-
	Mepo4g01938	528	ProSiteProfiles	Protein kinase domain profile.	296	528	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo4g01938	528	CDD	STKc_MAP3K-like	302	506	-	-
	Mepo4g01938	528	PRINTS	Tyrosine kinase catalytic domain signature	471	493	IPR001245	GO:0004672\|GO:0006468
	Mepo4g01938	528	PRINTS	Tyrosine kinase catalytic domain signature	369	382	IPR001245	GO:0004672\|GO:0006468
	Mepo4g01938	528	PRINTS	Tyrosine kinase catalytic domain signature	452	462	IPR001245	GO:0004672\|GO:0006468
	Mepo4g01938	528	PRINTS	Tyrosine kinase catalytic domain signature	406	424	IPR001245	GO:0004672\|GO:0006468
	Mepo4g01938	528	SUPERFAMILY	Protein kinase-like (PK-like)	284	504	IPR011009	-
	Mepo4g01938	528	Gene3D	Transferase(Phosphotransferase) domain 1	373	522	-	-
	Mepo4g01938	528	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	412	424	IPR008271	GO:0004672\|GO:0006468
	Mepo4g01938	528	Gene3D	Phosphorylase Kinase; domain 1	284	372	-	-
	Mepo4g01938	528	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	117	506	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo4g01938	Mepo-Chr4	24608795	24614105	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo4g01938	1	507	MAP Kinase Kinase Kinase	AT4G38470	51.948	2.11e-177	507

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Mepo4g01938		PK_Tyr_Ser-Thr	6.4e-53	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo4g01938	-		-	gmx:100818047	566.229