Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01857 ATGAAATCATTCACGGATCTTGGTTTATCATCTGAATTGGCGGAAGCTTGTGAAAGAAAACTGGTTTGGTATTTTCCGCTTAAGATTCAGACAGAAGTGATTCCCCTTGCGCTACAAGGGAAAGATGATGTGTTTGCAATTTCCCCAGCACGTTCTGGTAAGGCTGGGGCTTTTATTCTTCATATATTGCAAGCTCTCTTTGAAGCTGGTGGACCAAACCTAACCCCTTTCTTTGCTTGTGTGATCTGTCCCACAAGGGACCTTGGTTTACAAATTGCCAACAACTTTCAAGCTCTAGGTCATCAATTTGGTGTCAAGTTTGCTCGGCTATTTGAAGCAAGGGACTTGGTATATCAATCCAGTCAGATTTCACAGCAACCTCATATTATTGTCGGGACCCCTGGACAAATCTTCAATCACATACAACACACCCAAGGATTTTCTCTTGCACTTGCTAGTTTAAAATACCTGGTCATACATGACGCACACCTGCTGTTGAAAGATCACTTTGAGGAACAATTAAATGAGATTTTACTAATGATTCCTAGTGAGCGGAGAACATTTCTTTTTTCATCTAAAATGACAGATAAGGTCCATACCATCCAAAGTATGTGTTTAAGGAATCCTGTGAAGATTGACCTATCGTCCAAATATTCTATTCCGGACACACTGCAGCAGCATGGTTGTTTTATGCAAGAAAAACATAAGTATTTCTACCTTGTATACATTCTCACTGAAATGATGGGAAGGAAATCAATGGTATTCACTCAATCCTGTGGTCCAACACTTCTGCTGGCTTTGATTCTTAAGAATCTTGGTTTCAAAGCCATCCCAATTATTAGTTATATGAGTCAGGCAAAGAAACTTGGAGTTTTGAATGCTTTCAAGTCTGGGGAGTTCAATATTCTCCTTTGCAGTGAGATAGCCAGTAAGGGACTAGATATTCCAGCAGTAGATATGTTGATTAACTGCAACATTCCTTATGATCCAAACGATTATATCTACCGTGTGGGATGGACTGCTCCTGTTAATGGTGCAATTTCCTTTGTGAGCCCAAATGAAGAGTGGCGATTCAAAAGGATAGAGAAACATATAGGCAAGGAGCTACCATTGTATCCTGCACCATTTGAGGAAGTTTTGCTTTTCGAAGGGTATGTTAGTGAGGCTAAAAAATTAGCACAAGAGGAAATGAAAGAATCCGTTTGGAAGAGCGGAGGATATTTAGTAGACGAAGAGATAAAAAAGATCCCAAGTTTGAATTTTGCGAATCAAGTCAAGGAAAAGAAAGAATCTGGTTTGAAGGCCGAAGAATATTTTCCAAAGAAGGTACATGAACGGTATCCGGTACGGGTACCGGTACAGGTACGGGATACGACATTTCTCAAAAAACTAAGGTTCAGGTCACACTGA 1410 0.4014 MKSFTDLGLSSELAEACERKLVWYFPLKIQTEVIPLALQGKDDVFAISPARSGKAGAFILHILQALFEAGGPNLTPFFACVICPTRDLGLQIANNFQALGHQFGVKFARLFEARDLVYQSSQISQQPHIIVGTPGQIFNHIQHTQGFSLALASLKYLVIHDAHLLLKDHFEEQLNEILLMIPSERRTFLFSSKMTDKVHTIQSMCLRNPVKIDLSSKYSIPDTLQQHGCFMQEKHKYFYLVYILTEMMGRKSMVFTQSCGPTLLLALILKNLGFKAIPIISYMSQAKKLGVLNAFKSGEFNILLCSEIASKGLDIPAVDMLINCNIPYDPNDYIYRVGWTAPVNGAISFVSPNEEWRFKRIEKHIGKELPLYPAPFEEVLLFEGYVSEAKKLAQEEMKESVWKSGGYLVDEEIKKIPSLNFANQVKEKKESGLKAEEYFPKKVHERYPVRVPVQVRDTTFLKKLRFRSH 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01857 469 PANTHER RNA HELICASE 2 399 - -
Mepo4g01857 469 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 212 IPR014001 -
Mepo4g01857 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 340 IPR027417 -
Mepo4g01857 469 SMART helicmild6 263 338 IPR001650 -
Mepo4g01857 469 Pfam DEAD/DEAH box helicase 28 198 IPR011545 GO:0003676|GO:0005524
Mepo4g01857 469 Pfam Helicase conserved C-terminal domain 238 339 IPR001650 -
Mepo4g01857 469 Gene3D - 220 382 IPR027417 -
Mepo4g01857 469 SMART ultradead3 22 227 IPR014001 -
Mepo4g01857 469 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 380 IPR001650 -
Mepo4g01857 469 Gene3D - 1 217 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01857 Mepo-Chr4 23806404 23814928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01857 43 370 Eukaryotic Initiation Factors Gene Family AT5G11170 25.513 1.32e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01857 K14777 - gmx:100775796 430.639