Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01828 ATGACTTCCAGATTCTTTTACCAGGGTGGTGATCAAAGTGATACCGACGATGAACCCACTGATATTGATGACGAACCCAGTGATACTGAACCCACTCCAACAGATCCAAACGGTAAAAGCAAATACTTGGCTGGTGGTAATGCTGATGACAGCGACGATGATGATGGCCAAAAGCGTGTTGTTAAGTCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACTGTTGATCAGATCAAGAATGCTATCAAGATCAATGACTGGGTCAGCTTGCAAGAGAGCTTTGACAAGATCAACAAACAGCTCGAGAAAGTTATGCGTGTTATCGAGTCCCAAAAGATCCCCAATCTCTACATCAAGGCGCTCGTAATGCTTGAAGATTTCCTCGCTCAGGCTTCTGCTAATAAGGATGCCAAAAAGAAGATGAGTCCCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAAAAATTAAAGAAGAACAATAAGCAATACGAGGACTTGATTATCAAATGCAGGGAGAGTCCTGAGAGTGAGGGCGAAAAGGATGAAGACGATGAGGACTCTGACGAATATGAGTCCGATGATGAGATCATTGAACCTGATCAGCTCAGGAAGCCGGAGCCTGTATCGGATTCTGAAACTTCTGAGCTTGGTAATGACAGGCCTGGTGATGATGGCGATGCTCCTTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGAAAAAATGTTCATGAAAAAGCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCTCAGAAGCTGCAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGCCATATGCCCATAAGTGTGTGGAAAAAGTGTGTGCAGAACATGCTGGTCATTCTCGACATTCTCGTGCAGCACCCAAACATAAAGGTTGATGATTCTGTGGAGCTAGACGAGAATGAAACTAAGAAAGGGGATGACTATAACGGACCCATAAATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCCGAGTTTTTCAAGAGCTTGCAGTGCATTGATCCCCACACACGGGAATATGTTGAGAGACTCAGGGATGAGCCTCAGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGCATTGGAGATTTCAAAGCTTCTTCTAAGGTAGCCTTGAAGAGGGTTGAACTTATTTACTACAAACCACATGAGGTTTACGAAGCAACGAGAAAATTGGCTGAGATGACAGTAGAGGGAGATAATGGAGAGATGAGTGAGGAGTCAAAAGGTTTTGAGGATACAAGAATTCCTGCTCCGTTTGTTGTTACCCCGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAAAATAGCAGGACCTTAATGGATGTGTTAGTATCGCTGATATATAAATACGGAGATGAGCGCACTAAAGCACGCGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTCGCAGTAGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAAATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTTTGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCGCATGGCTGTTTGTCTGAACTTTATTCTGGTGGACGGGTGAAGGAATTGCTTGCGCAAGGAGTTTCACAGAGCCGTTATCATGAAAAGACCCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAAGTTCCCAACATGGCGGCCAATGTTCATGATGCAAAGCGTAAGATCATCAGTAAGAATTTTCGACGCTTGCTTGAGGTCAGCGAGAAACAAACATTCACCGGTCCTCCTGAAACTGTCAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAATGGAGATTTCCAGAAGGCCTTTGACATTATTGCATCTCTTGACGTCTGGAAATTTGTGAAAAATCGAGACGCCGTGCTAGAAATGCTGAAGGACAAAATCAAGGAAGAGGCACTTAGGACATACCTATTTACCTTCTCTTCATCATATGATTCTTTGAGCGTGGTTCAGCTCACAAATTTTTTCGATCTCTCTCTTCCTCGTGTTCATAGTATTGTCAGTAGGATGATGGTCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAACTGGGTGCATTATTTTCCGAAATGTTGAACACTCAAGGGTGCAGGCTTTGGCATTCCAGTTGACTGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCTACAGAAGCAAGGTTAGGCGGCGGTGGGTTGGATCTGCCTCCAAGGCGGAGAGATGGGCAGGATTATGCTGCTGCAGCTGCTGGCGGTGGTAGTGGAACGTCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAAGGCAGTGGACGTACGGGATACGGTGGAGGAAGAGCATTATCGTTCAGTCAAGCTGGCGGGAGTGGTGGCTATTCTAGAGGACGGGGAACGGGTGGAGGCGGCTATCAGAACTCAGGGAGGACTCAAGGGAGTTCAACATTGAGGGGACCCCACGGAGATACTTCTACCCGCATGGTTAGCCTTAGGGGAGTTCGTGCTTGA 2808 0.4544 MTSRFFYQGGDQSDTDDEPTDIDDEPSDTEPTPTDPNGKSKYLAGGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKIPNLYIKALVMLEDFLAQASANKDAKKKMSPSNAKAFNSMKQKLKKNNKQYEDLIIKCRESPESEGEKDEDDEDSDEYESDDEIIEPDQLRKPEPVSDSETSELGNDRPGDDGDAPWDQKLSKKDRLLEKMFMKKPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGDDYNGPINVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPQFVVLAQNVQEYLESIGDFKASSKVALKRVELIYYKPHEVYEATRKLAEMTVEGDNGEMSEESKGFEDTRIPAPFVVTPELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRLLEVSEKQTFTGPPETVRDHVMAATRVLINGDFQKAFDIIASLDVWKFVKNRDAVLEMLKDKIKEEALRTYLFTFSSSYDSLSVVQLTNFFDLSLPRVHSIVSRMMVNEELHASWDQPTGCIIFRNVEHSRVQALAFQLTEKLSILAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGSGTSSGGRWQDLSYSQTRQGSGRTGYGGGRALSFSQAGGSGGYSRGRGTGGGGYQNSGRTQGSSTLRGPHGDTSTRMVSLRGVRA 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01828 935 SUPERFAMILY "Winged helix" DNA-binding domain 720 795 IPR036390 -
Mepo4g01828 935 MobiDBLite consensus disorder prediction 178 197 - -
Mepo4g01828 935 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 44 656 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mepo4g01828 935 Pfam PCI domain 664 792 IPR000717 -
Mepo4g01828 935 MobiDBLite consensus disorder prediction 1 66 - -
Mepo4g01828 935 MobiDBLite consensus disorder prediction 171 233 - -
Mepo4g01828 935 MobiDBLite consensus disorder prediction 217 233 - -
Mepo4g01828 935 MobiDBLite consensus disorder prediction 14 30 - -
Mepo4g01828 935 Coils Coil 147 174 - -
Mepo4g01828 935 ProSiteProfiles PCI domain profile. 624 796 IPR000717 -
Mepo4g01828 935 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 930 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mepo4g01828 935 MobiDBLite consensus disorder prediction 823 935 - -
Mepo4g01828 935 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 3 875 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mepo4g01828 935 MobiDBLite consensus disorder prediction 900 922 - -
Mepo4g01828 935 MobiDBLite consensus disorder prediction 853 873 - -
Mepo4g01828 935 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 725 813 IPR000717 -
Mepo4g01828 935 MobiDBLite consensus disorder prediction 135 156 - -
Mepo4g01828 935 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01828 Mepo-Chr4 23478439 23482878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01828 1 935 Eukaryotic Initiation Factors Gene Family AT3G56150 66.208 0.0 1143