Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01804 ATGTCTGCTCCTCTTGATCGCTTCGCTCGTCCATGTTTTGAAGGTTTTTCTGGTAATGATGAAAGAAGAGAGCAGAGGAAATCAGATTTTGAGAATTCGGAGGATGATAGGAGAACAAGAAATGGAAGTTTGAAAAAGAAAGTCATAAATGCTTCAAGTAAATTCCGCCATTCTCTTAGGAAGAAAAGCAGCCGGAGAAAGAATGCAAGTCGGAGTAATTCGCTTGCCATTGAAGATGTTAGAGATGTTAAGGAGTTACAAGCAGTGGATGCTTTTCGACATTCACTTATTTCCGATTGCTTGTTGCCATCAAGACATGATGATTATCATATGTTATTGAGATTCTTGAAAGCAAGGAAATTTGACATTGAGAAGGCAAATCAAATGTGGGCCAACATGATCCAATGGAGGAAAGAGTATGGTACCGATACAATTATGGAGGATTTTGAGTTCAGTGAGTTGGACGAAGTCCTACAATATTATCCACATGGTTATCATGGTGTTGATAAGGAAGGAAGACCTGTTTATATTGAGAGGCTAGGTAAAGTTGATCCAAATAAGCTTATGCAAGTAACTACCATGGAAAGGTATTTAAAATACCATGTACAGGGTTTTGAGAAAACGTTTGCTGTTAAGTTTCCTGCTTGTTCTATTGCTGCAAAGAGACATATAGATTCAAGTACAACCATTTTAGATGTTCATGGTGTGGGTTTCAAAAACTTCTCCAAAATTGCACGTGAACTCATCCAGCGGCTGCAGAAAATTGATGGTGACTACTATCCCGAAACATTATGTCGAATGTTTATAATCAACGCTGGTCCTGGTTTCAAGCTTCTTTGGAACACAGTGAAAACATTTCTTGACCCCAAAACTAGTTCAAAGATAAATGTTCTTGGAAACAAGTTCCAGAGTAAGTTGTTTGAAATTATTGATGTCAGTGAGCTGCCAGAGTTTCTTGGTGGTACTTGTACTTGTATAGATCAAGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGATCCAAACATTTTGAAGATGGTTCTCAATGGTGAAATACAATGTTCTAGACAGATAGTAACAATTTCTAATGATGAGGGGACAGTGATTGAATGTGATAAGGCATCTTATCCAATGGTGCAGATAAGAAGTAGTGATACATCAACAGCAGAATCAGGATCTGAAGTTGAAGATATCACTTCTCCCAAAGCAAGTGGGAATTATACAAACCCTAGGTTGACTCCTGTCCATGAAGAAGCAAGATTGGCTGGTAGGGCTGGTCTTTCTGCCGGTTTACCTGAGTATGATGAGTATGTTCCCATGGTTGACAAGACTGTGGATGTTACGTGGAAGGAGAAACAAGTTTCAACTAAAAACTCACATGGCTCAACAGAAAAATATCTATCAAGGACTGGAGGATCGGATGGAAACCGTGTATATATCTGGGCTATTATAATTGGCTTCTTTGTTGCCATTTTTACTTTTGCTCGCTCAATAGCATTTCGTATGACTAAGAGAATAAAGGACAATGAATCTGACAGTGTCCAACCAACAATCAAGGAGGAATCTCGTGTCCTTTCACCCGCTCCCATATCGACAAAGGAAGAACTTGCTCCATCAGCTTTGGAACGCCTTTGTGAGCTTGAAGAGAAGGTTGTAATGCTGCAGTCAAAACCTAATGTAATGCCATGTGAGAAAGAGGAGCTGCTGAATGCTGCTGTTTATCGCGTGGATGCATTGGAAGCTGAATTGATTACTACAAAGAAGGCTTTATACGAAGCTTTGATCAGACAAGAGGAACTTATGGCATACATAGACGGTCAGGAAAGAAGAAAATTCGAGAAAAGGAAATTTTGCCGGTTTTGA 1866 0.396 MSAPLDRFARPCFEGFSGNDERREQRKSDFENSEDDRRTRNGSLKKKVINASSKFRHSLRKKSSRRKNASRSNSLAIEDVRDVKELQAVDAFRHSLISDCLLPSRHDDYHMLLRFLKARKFDIEKANQMWANMIQWRKEYGTDTIMEDFEFSELDEVLQYYPHGYHGVDKEGRPVYIERLGKVDPNKLMQVTTMERYLKYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVHGVGFKNFSKIARELIQRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKTFLDPKTSSKINVLGNKFQSKLFEIIDVSELPEFLGGTCTCIDQGGCMRSDKGPWQDPNILKMVLNGEIQCSRQIVTISNDEGTVIECDKASYPMVQIRSSDTSTAESGSEVEDITSPKASGNYTNPRLTPVHEEARLAGRAGLSAGLPEYDEYVPMVDKTVDVTWKEKQVSTKNSHGSTEKYLSRTGGSDGNRVYIWAIIIGFFVAIFTFARSIAFRMTKRIKDNESDSVQPTIKEESRVLSPAPISTKEELAPSALERLCELEEKVVMLQSKPNVMPCEKEELLNAAVYRVDALEAELITTKKALYEALIRQEELMAYIDGQERRKFEKRKFCRF 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01804 621 SMART CRAL_TRIO_N_2 108 133 IPR011074 -
Mepo4g01804 621 SMART sec14_4 153 324 IPR001251 -
Mepo4g01804 621 Pfam CRAL/TRIO, N-terminal domain 107 132 IPR011074 -
Mepo4g01804 621 MobiDBLite consensus disorder prediction 1 47 - -
Mepo4g01804 621 SUPERFAMILY CRAL/TRIO N-terminal domain 84 149 IPR036273 -
Mepo4g01804 621 Gene3D - 40 140 - -
Mepo4g01804 621 PRINTS Cellular retinaldehyde-binding protein signature 280 299 - -
Mepo4g01804 621 PRINTS Cellular retinaldehyde-binding protein signature 111 133 - -
Mepo4g01804 621 PRINTS Cellular retinaldehyde-binding protein signature 313 322 - -
Mepo4g01804 621 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 25 608 - -
Mepo4g01804 621 MobiDBLite consensus disorder prediction 384 412 - -
Mepo4g01804 621 FunFam SEC14 cytosolic factor 141 353 - -
Mepo4g01804 621 MobiDBLite consensus disorder prediction 16 43 - -
Mepo4g01804 621 CDD SEC14 154 322 IPR001251 -
Mepo4g01804 621 Gene3D - 141 352 IPR036865 -
Mepo4g01804 621 SUPERFAMILY CRAL/TRIO domain 153 347 IPR036865 -
Mepo4g01804 621 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 153 327 IPR001251 -
Mepo4g01804 621 Pfam CRAL/TRIO domain 159 321 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01804 Mepo-Chr4 23290358 23295812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01804 112 318 Acyl Lipid Metabolism Gene Families AT1G55840 30.516 6.66e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01804 K26544 - gmx:100812774 975.696