Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01791 ATGCAACATCCACATTACATTTGCAACACCGTGCGTTTGGTTTCCTCTAACTTGTGTTGTCAATCTGCTGCTGGTGTAAAACCATTCTACTCCGGCTTTCTTGTGCATTTTGCCAACTCAATAGTAGGAACCATTCGGGAGATAACTCTCGAACTGTTCGGTTTCTATCTCCCAAACAAATATGAAGAAAGCATAAAATCTGAAGCTCAGTCCCAAACCCTAGTTTCATTTTCTTCTCCATCTCCATCTCCATCTACTGCGGCAAGGATGTCGAAAGAGGAAGTGAAAACGGTGGTTCCTGAATCCGTTTTGAAGAAGCAGAAAAGGAACGAAGAATGGGCATTGGTGAAGAAGCAGGAACAAGATTCAGCTAAGAAGAAGAGGGCTGAAACAAGGAAACTCATTTGGAGTAGAGCCAAACAATACGCCAAGGAATATGATGATCAGCAAAAGGAGTTGATCAGGTTGAAGCGTGAAGCTAAACTCAAGGGTGGATTTTATGTTGACCCTGAAGCTAAGCTTTTGTTCATTATCAGGATCAGAGGTATCAACGCTATGGACCCAAAATCAAGGAAGATTTTGCAGCTTTTGCGTTTGAGACAGATCTTTAATGGTGTCTTTCTCAAAGTTAACAAAGCAACCGTGAACATGCTCCACAGGGTTGAGCCTTATGTTACATACGGGTACCCTAATCTGAAGAGCGTCAGGGAATTGATCTACAAGAGGGGCTACGGCAAAGTTGACAGGCAGAGAATTGCTTTGACAGACAACTCTATCATCGAACAGGTTCTTGGGAAGCACGGTATCATCTGTATTGAAGATCTGATTCACGAGATACTAACAGTTGGTCCTCACTTCAGAGAGGCAAACAACTTCCTGTGGCCTTTCAAGCTCAAAGCTCCCCTAGGTGGTATGAAGAAGAAAAGAAATCATTATGTTGAAGGTGGTGATGCTGGAAACAGGGAAGACTACATCAACGAACTCATCAGAAGGATGAATTAG 1002 0.4291 MQHPHYICNTVRLVSSNLCCQSAAGVKPFYSGFLVHFANSIVGTIREITLELFGFYLPNKYEESIKSEAQSQTLVSFSSPSPSPSTAARMSKEEVKTVVPESVLKKQKRNEEWALVKKQEQDSAKKKRAETRKLIWSRAKQYAKEYDDQQKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREDYINELIRRMN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01791 333 Pfam Ribosomal L30 N-terminal domain 99 170 IPR012988 -
Mepo4g01791 333 NCBIfam 60S ribosomal protein uL30 100 333 IPR005998 GO:0000463|GO:0003735|GO:0022625
Mepo4g01791 333 Pfam Ribosomal protein L30p/L7e 175 225 IPR016082 -
Mepo4g01791 333 SUPERFAMILY Ribosomal protein L30p/L7e 174 333 IPR036919 -
Mepo4g01791 333 Coils Coil 139 163 - -
Mepo4g01791 333 PANTHER 60S RIBOSOMAL PROTEIN L7 97 333 IPR039699 -
Mepo4g01791 333 FunFam 60S ribosomal protein L7 279 333 - -
Mepo4g01791 333 ProSitePatterns Ribosomal protein L30 signature. 193 225 IPR018038 -
Mepo4g01791 333 CDD Ribosomal_L7_archeal_euk 174 333 IPR035808 -
Mepo4g01791 333 Gene3D - 280 333 IPR036919 -
Mepo4g01791 333 Gene3D - 174 279 IPR036919 -
Mepo4g01791 333 FunFam 60S ribosomal protein L7 174 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01791 Mepo-Chr4 23154360 23158067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01791 90 333 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 82.377 1.38e-153 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01791 K02937 - gmx:100500011 437.958