Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01785 ATGACGGACGGTCATCTCTTTAACAACATTACCCTCGGCGGCCGTGGCGGCACCAATCCGGGGCAGATAAAAATATATTCTGGAGGAATTTTATGGAAGAGACAGGGAGGTGGAAAATCAATTGATGTTGATAAGGCTGACATAACGGGCGTAACATGGATGAAGGTTCCAAAGACTAATCAACTTGGTGTTCAGATCAAAGATGGGTTGTTCTACAAATTCACTGGTTTCCGTGATCAGGATGTTGCAAGCTTGACAAGTTTCTTCCAAAACACCTTCGGAGTAACTGTTGGGGAGAAGCAACTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGATCTAAACGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCCCAAACAAACCTTCAAGGGAAAAATGACGTGATGTTGGAGTTTCATGTGGATGACACAACTGGAGCAAATGAGAAAGATTCTTTGATGGAGATGAGTTTCCACGTACCAAGTTCCAATACCCAGTTTGTTGGTGATGAAGATCGCCCTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGAGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAGTTACACCTGTCATTTTTGCGGCTTCAAGGACAGGCTAACGATTTCAAAATCCAGTACAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTCGTCATTATTAGTCTTGATCCTCCTATTCGCAAAGGACAGACTTTGTACCCTCATATCGTGATGCAGTTTGAAACTGATTATGTGGTTGAAAGTGAATTGGCAATGAGTGAAGATCTTTATAACTCGAAATACAAAGACAAATTGGAGCTGTCTTACAAGGGGCTTATCCATGAAGTGTTTACCACAATATTGCGTGGTTTGTCTGGGGGCAAAGTTACCAAGCCTGGAAAATTTAGAAGCTGTCAAGATGGTTATGCAGTGAAGTCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTGCCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAACATGCATTACTTTGACCTTCTTATTAGACTCAAATCTGAGCAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAATACCATAATTTGTATGGTTTTATCAGCTCTAAGGGCTTGAAAATTATGAATTTAGCTGATGCCCAACCAACTGTTGGTGTGGCCAAGGTGCTTGAGAATGATGATGATGATGCTGTCGATCCACATCTCGAGCGCATCAGAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCAGATTTTGTTCTCGACAAGGATGACGGAGGTTCTCCTACTGATGATTCTGGTGCAGATGACTCTGATGCTAGCCAAAGTGGTGGTGAGACAGAGAAGCCTGCCAAGAAAGAACCAAAGAAGGATCTGCCTTCTAAGGCATCTACTTCTAAGAAGAAATCAAAAGACGCTGATGACGAAGGAGTGAAGAAGAAACAGAAGAAGAAAAAGGACCCAAATGCACCTAAGAGGGCACTGTCTGGTTTCATGTTCTTTTCTCAGATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAAAAATGGAAAAATCTGTCAGCGGAGGAGAAGGAACCTTATGAGGCCAAAGCCCAAGAAGATAAAAAACGTTACAAGGATGAGATGAGTGGTTACAACAGGAATCCTCAACCCATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA 1929 0.423 MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKSIDVDKADITGVTWMKVPKTNQLGVQIKDGLFYKFTGFRDQDVASLTSFFQNTFGVTVGEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVMLEFHVDDTTGANEKDSLMEMSFHVPSSNTQFVGDEDRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVESELAMSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNLADAQPTVGVAKVLENDDDDAVDPHLERIRNEAGGDESDEEDSDFVLDKDDGGSPTDDSGADDSDASQSGGETEKPAKKEPKKDLPSKASTSKKKSKDADDEGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQEDKKRYKDEMSGYNRNPQPMNIDSGNESDSA 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01785 642 MobiDBLite consensus disorder prediction 508 549 - -
Mepo4g01785 642 Pfam HMG (high mobility group) box 557 625 IPR009071 -
Mepo4g01785 642 MobiDBLite consensus disorder prediction 625 642 - -
Mepo4g01785 642 SMART Rtt106_2 348 441 IPR013719 -
Mepo4g01785 642 SMART hmgende2 556 626 IPR009071 -
Mepo4g01785 642 MobiDBLite consensus disorder prediction 597 622 - -
Mepo4g01785 642 SUPERFAMILY HMG-box 548 633 IPR036910 -
Mepo4g01785 642 Gene3D - 1 93 IPR011993 -
Mepo4g01785 642 MobiDBLite consensus disorder prediction 597 642 - -
Mepo4g01785 642 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Mepo4g01785 642 FunFam FACT complex subunit SSRP1 96 179 - -
Mepo4g01785 642 CDD HMG-box_AtSSRP1 553 626 - -
Mepo4g01785 642 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Mepo4g01785 642 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Mepo4g01785 642 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Mepo4g01785 642 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Mepo4g01785 642 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Mepo4g01785 642 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Mepo4g01785 642 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Mepo4g01785 642 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Mepo4g01785 642 SUPERFAMILY PH domain-like 206 440 - -
Mepo4g01785 642 Gene3D - 95 179 IPR038167 -
Mepo4g01785 642 MobiDBLite consensus disorder prediction 469 565 - -
Mepo4g01785 642 FunFam FACT complex subunit SSRP1 540 633 - -
Mepo4g01785 642 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 557 625 IPR009071 -
Mepo4g01785 642 FunFam FACT complex subunit SSRP1 1 93 - -
Mepo4g01785 642 Gene3D High mobility group box domain 540 638 IPR036910 -
Mepo4g01785 642 Pfam POB3-like N-terminal PH domain 7 97 IPR035417 -
Mepo4g01785 642 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Mepo4g01785 642 FunFam FACT complex subunit SSRP1 339 447 - -
Mepo4g01785 642 FunFam Fact complex subunit ssrp1 199 338 - -
Mepo4g01785 642 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 611 - -
Mepo4g01785 642 Gene3D - 339 447 IPR011993 -
Mepo4g01785 642 Gene3D - 199 338 - -
Mepo4g01785 642 CDD PH2_SSRP1-like 342 441 - -
Mepo4g01785 642 Coils Coil 607 627 - -
Mepo4g01785 642 CDD PH1_SSRP1-like 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01785 Mepo-Chr4 23126821 23132695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01785 553 624 ARID Transcription Factor Family AT1G04880 43.056 4.31e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mepo4g01785 Rtt106 1.3e-19 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01785 K09272 - gmx:100805034 1128.24