Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01780 ATGAAATCATTTACGGATCTAGGCTTATCTCTTCAATTGGTTGAAGTTTGTGAAAAACAACTCGATTGGTATGATCCGCGAAAGATTCAAGCACAAGTCATCCCCCTTGCTCTTGAAGCAACCTCCGACATGGAATTTCAAACCAACGAGATTTTACAGCAACCTCATATCATTGTAAGTAGTGTCGTTACTCTTGGAAATTTTATCTATTTCAATTTACCACTCCTTCTAATTGATTTCTTACTCTTCAAGGTTGCGACTCCTGGAAAACTCGTCAAACACCTGAAAGACACCCCAGCATTTTCTCTTCGTAAATTAAAATACCTGGTCATAGATGACGCACACCTGCTGGAATCGAATTATAAGCACATTGATAAACAACTTGAGTTTATTTTAGGAAAGATTCCTCCTAACCGGACAACATTTCTTTTTTCAGATTCAAAGACAGACAAGGTCGATATGATCCAAAGTGTGTTTTTAAGGAATCCTATTGACGAATCTATCGAATATCCTGAGCAGCAGCAATGCCATATGCCAGCAAAAGATAAGGATTGCTACCTTGCGTACACTCTCTCTCAAATGGCTGGTAAAACATCATTGGTATTCGCTCGGGCTTTTGATTTATTGCTTCGTCTGGCTTTGACTCTTAGGGATTTTGGTTTCAAAATCATCCTAATCAATGGTCTTATGAGTCAGGCAAAGAGACTTGAAGCCTTGAATGCGTTCAAGTCTGGGAACTGCAAAATTCTCCTTTGTAATGACGTAGCTAGTAGGGGACTAGATATTCCAGCAGTAGATATGGTGATTAACTACGACATACCCAGCGACCCCAGAGATTATATGCACCGTGTGGGACGGGCTGCTCCTGCTGGAGTTGCCATTTCCTTTGTGAGCCCAAATGAGGCGAGATGGTTTGAAATGATAGAGACATGTATAGGGAAGAAGCTACCCGTGTATCCGGCACAAAATGAGGAAGTACTTCGTTTCAGTAACCGTGTTAGTGTGGCCAAAAGTTCAGCGGATGAGGAAATGAACAATAACAGTTGGAGGAGTGGAGGATATTTAGGAGAGGAGGATGTCCGTAAGATCGAAAGTGTGTTTTCAAGGAATCATGTGAAGGTTTTCGTATCTCCCGAAGTGTTGGAGACACTGAAGCAGCAGCAACATAAGGAAATTATCTCGGCGACCGAAAACTCTGAAAGTTCAGCTGATGGCGATATTGTTATCGAAACAAATGATGGAGTTGCTCACAATGTTGAACGAGTCTTCGCGCTGCAGATTCTGACAAAGTATGGCCTTGCAGCATCCGAAACAGAATTGAAACTTTCCAATGTGGGAAGCGATGCCCTGAAGACTGCCATTAAGCTCTTAAAAGAACTCCAAGCCAATCAGAAGATCGACGCGGAAGATTTTACAGATGAGCAACTCAAAGAACTTGTCATAGCGGTTTATCACCTCGCCTTCAGTGAGCTTCAAAATTCCTTATGTCAGGTCATTGCTGATAGATTACAAAATCAAAACAAGACTTATATCCAGACATTTTTTGGATTTCAAGAGGAAGAGAGCAAGTTAAAGGAGGAGGATGCTTAG 1590 0.4157 MKSFTDLGLSLQLVEVCEKQLDWYDPRKIQAQVIPLALEATSDMEFQTNEILQQPHIIVSSVVTLGNFIYFNLPLLLIDFLLFKVATPGKLVKHLKDTPAFSLRKLKYLVIDDAHLLESNYKHIDKQLEFILGKIPPNRTTFLFSDSKTDKVDMIQSVFLRNPIDESIEYPEQQQCHMPAKDKDCYLAYTLSQMAGKTSLVFARAFDLLLRLALTLRDFGFKIILINGLMSQAKRLEALNAFKSGNCKILLCNDVASRGLDIPAVDMVINYDIPSDPRDYMHRVGRAAPAGVAISFVSPNEARWFEMIETCIGKKLPVYPAQNEEVLRFSNRVSVAKSSADEEMNNNSWRSGGYLGEEDVRKIESVFSRNHVKVFVSPEVLETLKQQQHKEIISATENSESSADGDIVIETNDGVAHNVERVFALQILTKYGLAASETELKLSNVGSDALKTAIKLLKELQANQKIDAEDFTDEQLKELVIAVYHLAFSELQNSLCQVIADRLQNQNKTYIQTFFGFQEEESKLKEEDA 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01780 529 SUPERFAMILY Skp1 dimerisation domain-like 473 527 IPR036296 GO:0006511
Mepo4g01780 529 Gene3D - 172 342 IPR027417 -
Mepo4g01780 529 Gene3D Potassium Channel Kv1.1; Chain A 404 529 IPR011333 -
Mepo4g01780 529 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 190 327 IPR001650 -
Mepo4g01780 529 Gene3D - 41 169 IPR027417 -
Mepo4g01780 529 CDD SF2_C_DEAD 172 297 - -
Mepo4g01780 529 PANTHER RNA HELICASE 85 348 - -
Mepo4g01780 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 308 IPR027417 -
Mepo4g01780 529 SMART helicmild6 210 291 IPR001650 -
Mepo4g01780 529 Pfam DEAD/DEAH box helicase 85 145 IPR011545 GO:0003676|GO:0005524
Mepo4g01780 529 Pfam Helicase conserved C-terminal domain 186 288 IPR001650 -
Mepo4g01780 529 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 166 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01780 Mepo-Chr4 23094094 23100980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01780 85 298 Eukaryotic Initiation Factors Gene Family AT5G11170 26.991 6.99e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01780 K14777 - mtr:25482146 324.324