Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01743 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCACCCCCAAGCCCTCCTTACTCAAGTAATAATAATAACAGTGATGCCGGCAATTTTGAATGCAACATTTGTTTTGACTTAGCACAAGATCCTATTATTACTTTGTGTGGTCATCTTTTCTGTTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCGGTTTGCAAGGCGATGATTGAGGAGGAGAAATTGGTTCCTTTATATGGGAGAGGAAAGACGTCAACTGATCCGAGATCAAAATCTATTCCCGGTGTTAATATCCCTCATCGTCCTGCCGGTCAGAGACCTGAAACCGCTCCTCCACCTGAATCAAATCCTTTTTCTCAACATGGATTTGGATTCACAGGTGGATTAGGGGGATTTGCACCAGCAACAACTGCAAGATTTGGGAATTTCACATTTGCTGCAGGATTTGGTGGATTGGGGGGATTTATACCATCCTTATTTAACTTTCAGTTGCATGGTTTTCACGGTGGGGCCATGTATGGTGGAGCTGCTGGTTTCCCTTACGGGTTTTCTAATGCATTTCACGGTGGCCATGTTCATAGATATCCTCTACACACAGGCCAAGGGCAACAAGATTATTATCTGAAGAGGCTGCTGATGTTTGTTATTTTTTGTGTGGTACTTGCTTTACTTTGGCAATAG 699 0.4378 MASGFGESTSRSPPSPPYSSNNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAMIEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFSQHGFGFTGGLGGFAPATTARFGNFTFAAGFGGLGGFIPSLFNFQLHGFHGGAMYGGAAGFPYGFSNAFHGGHVHRYPLHTGQGQQDYYLKRLLMFVIFCVVLALLWQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01743 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 86 IPR013083 -
Mepo4g01743 232 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Mepo4g01743 232 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Mepo4g01743 232 SMART ring_2 32 72 IPR001841 -
Mepo4g01743 232 SUPERFAMILY RING/U-box 29 85 - -
Mepo4g01743 232 MobiDBLite consensus disorder prediction 1 22 - -
Mepo4g01743 232 CDD RING-HC_AtRMA-like 30 74 - -
Mepo4g01743 232 Pfam Zinc finger, C3HC4 type (RING finger) 30 77 - -
Mepo4g01743 232 MobiDBLite consensus disorder prediction 86 123 - -
Mepo4g01743 232 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Mepo4g01743 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 229 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01743 Mepo-Chr4 22699602 22701573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01743 30 215 C3H Transcription Factor Family AT1G19310 67.857 5.06e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01743 K10666 - gmx:100527488 370.933