LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo4g01670	ATGGATGATTTCGATATCATGGATATGGATATGGATATGGAAATGGACGTTCCTCTCCCCGAAGAACTCGAATTACTTGAATCAACCTATCGCACTTACGAACAACAACCCGATGATGATCACTACTTTTACAATCCTCCCGTAGACGAACCCGAACCCGAAAAACAACAATCGCCAACAGATCTCGCTAACAGTCACAAGCGTTCCCGTTCGAATTCAGATTCCGATTTGGATTTGGATTGTTCTGATGTTGAAAAGAGAGAGAAAGTTAGGGTTAGAGTTGCGGAAGATGCTCCTGCAGAAGAAGAGGATTGGCTTCAGCCACCTCCTTCGGAAGTTACAGTTGAAGAAGTGAGATTCTCTAAGGATAAGAGGTTATCGCGATTTGCGTCGGAGATTGATGGTGAAGTTATGCCTGTAACTGCTCCGAATGGAGATAGGGTTTATACGAAGCTGGATAGGTATTATGGTGAAGATCGAGTCACGAAGCTGAATTGTAGAGGAGATTCTTCTGATCTTGCTGTAGAACCTATTAATGTTTTGTTAGAAAGGTTAGATCAAGAGAATTTCGCTAAGACCTTGGAAGCTAGTTCTGAAAGTCAAAGTGTTGTAGATGTTCCTGAAACACTAACGGTCCATGAAAAACTTTGGGTCGATAAATATGCTCCCAAGTCTTTTACTGATCTTCTTAGTGATGAACAGACAAATCGCGAGGTACTCTTGTGGTTAAAACAATGGGATTCTACTGTGTTTGGATCTGAAATTCGAAGTACATCAGACGACGTTTTGTCTGCTTTGAAACGGCATTCTTCTATATCCCATAAACCGAAACCTCTAGCTTCAAATTTTCCTAGAACAAAAGGAGGGCACAGTTGGAGTAGTAATAGTGCTTCAAATTTTCAAAGAACAAAAGGAGGGCACACCTGGAGTAGTAATAGTAACAGGTATACAAATTTTAAGAGTACAGATGAGAGTGGTAGTTCAAATGGTTTTCAGGATACACGCAATGCGAAGTCACGGAATACCGGTGCACCAGAACAGAAGATCCTTCTGCTATGTGGACCACCAGGTCTGGGAAAAACAACACTTGCACATGTAGCTGCTAGGCATTGTGGATATCATGTGGTGGAGGTTAATGCCAGTGATGATCGTTCTACGTCAACAATTGAAGCAAAAATCCTCGATGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGTGATGGAAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCTGAAAAGAAGCCTGATGCAGGGAAGCAAAGTTTGGATAAAGGACAAATGGAAAGGAAATCATCAAAGAAGGGGCGAAAAACAGCATCCCTGTCAAGACCTGTGATTTGCATATGTAATGACCTATATGCACCTGCCTTAAGATCATTACGCCAAGTGGCCAAGGTTCATATATTTGTTCAACCAACAGTTAGTCGGGTGGTAAGCAGACTAAAATATATATGTAACAAGGAGGGGGTGAAAGCCAGTGCCATTGCACTCAGTGCTTTAGCGGATTATACAGCATGTGATATACGCTCATGCTTGAACACTCTCCAATTTCTCTCTAAGAAGAAAGAAACCCTCAATGCGTTTGATATTGGTTCGCAAGTTGTTGGTCAGAAGGACATGTCAAAAAATGTTCTCGACATCTGGAAAGAGTTGTTCCAAAGAAAAAGAACAAAAAAGATGGAAAGAAAATCTCTCAATAGCAAGTTCTCTGAATTTGACACCTTGTACTCCCTTATATCATACCGTGGTGATAGTGACCTGATTCTGGATGGAATTCATGAAAATATTCTGCAGCTCAATTATCATGATCCAGTTATGCAGAAAACTGTCAAGTGTCTCAACAGTCTTGAAGTTTATGATATGGTGCATCAATATATAATGCGTACACAACAAATGCCTCTCCTTGTTCATTTGCCTACCATAGCAATTATTGTACATCATACAGTAGCCCAAGTTCAAAAGCCAAATATTGAGTGGCCAAAGTCATATCACAGGTATCGAACAACGATGATGGAAAAGATGGACATTTTGAATACTTGGCACCACAAAATATCGCCACATATTGCAAGGCACTTATCACCTACTTCCTTTGTTGAAGACTTAATTTCTCCATTGTTGGACATTTTATCCCCACCATCCATAAGACCGGTGGCATTACAGCTACTGTCGGATAAGGAGAAGAACGATATTGCTCAATTAGTTAGCACAATGGTCTCATATGCCATCACATATAAGAAAATGAAATCAGATGCACTGCCTAATACCCTGAAATATGAAGTAGCAGATGAATTGTCTTTGTCTCTTGTTCCTTCTATCGGTAGCTTTATAAACTTTAAGGATTATACAGCAAACCATTATGCACTTTCTTTACCTATGAAGCAGGTTTTGGTGCATGAAGTTGAAAAGCAAAAGATTTTACAAGCTAATATCAAAACTGCGACTTTAACAAATGGAGGGCATAACATTATTGAGGCTGGAAACAACAACAACATCCCATTTGCTAGTACCAAGAATCATGCAGCTGCACTTGATATGAAAACTATTGAAAGTCAATCTAATGTTTTAGGAAGGAAATCAAATCAACATCCCAAGACAGTTTCACCAAACTTGAATCCCACTAAAATTGCAAATGCAACAGACAAGACAAAACTGCTAGACATGGCAAATAAGAAAAAACCATCTAGGAGTTCCTTAAATTTCTTCGACAGGTTTAAGAAGTCAAGTGTTAAGGGTCTCCAAAATGATGACAGATCCCTACAGAAAGAAACTACATCAGAGAAAGATCGAAGCCCTTTACTTTTTAAATTTAATGAGGGTTTTACAAATGCAGTCAAACGACCTGTTCGCATGCGCGAATTCCTGTCCTAG	2943	0.3993	MDDFDIMDMDMDMEMDVPLPEELELLESTYRTYEQQPDDDHYFYNPPVDEPEPEKQQSPTDLANSHKRSRSNSDSDLDLDCSDVEKREKVRVRVAEDAPAEEEDWLQPPPSEVTVEEVRFSKDKRLSRFASEIDGEVMPVTAPNGDRVYTKLDRYYGEDRVTKLNCRGDSSDLAVEPINVLLERLDQENFAKTLEASSESQSVVDVPETLTVHEKLWVDKYAPKSFTDLLSDEQTNREVLLWLKQWDSTVFGSEIRSTSDDVLSALKRHSSISHKPKPLASNFPRTKGGHSWSSNSASNFQRTKGGHTWSSNSNRYTNFKSTDESGSSNGFQDTRNAKSRNTGAPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEVLLKMISAEKKPDAGKQSLDKGQMERKSSKKGRKTASLSRPVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVSRLKYICNKEGVKASAIALSALADYTACDIRSCLNTLQFLSKKKETLNAFDIGSQVVGQKDMSKNVLDIWKELFQRKRTKKMERKSLNSKFSEFDTLYSLISYRGDSDLILDGIHENILQLNYHDPVMQKTVKCLNSLEVYDMVHQYIMRTQQMPLLVHLPTIAIIVHHTVAQVQKPNIEWPKSYHRYRTTMMEKMDILNTWHHKISPHIARHLSPTSFVEDLISPLLDILSPPSIRPVALQLLSDKEKNDIAQLVSTMVSYAITYKKMKSDALPNTLKYEVADELSLSLVPSIGSFINFKDYTANHYALSLPMKQVLVHEVEKQKILQANIKTATLTNGGHNIIEAGNNNNIPFASTKNHAAALDMKTIESQSNVLGRKSNQHPKTVSPNLNPTKIANATDKTKLLDMANKKKPSRSSLNFFDRFKKSSVKGLQNDDRSLQKETTSEKDRSPLLFKFNEGFTNAVKRPVRMREFLS	980

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo4g01670	980	PANTHER	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	13	979	-	-
	Mepo4g01670	980	MobiDBLite	consensus disorder prediction	270	343	-	-
	Mepo4g01670	980	Gene3D	-	214	495	IPR027417	-
	Mepo4g01670	980	SMART	AAA_5	346	500	IPR003593	GO:0016887
	Mepo4g01670	980	FunFam	Chromosome transmission fidelity protein 18	497	564	-	-
	Mepo4g01670	980	CDD	AAA	330	435	-	-
	Mepo4g01670	980	MobiDBLite	consensus disorder prediction	879	899	-	-
	Mepo4g01670	980	Gene3D	-	497	567	-	-
	Mepo4g01670	980	Pfam	ATPase family associated with various cellular activities (AAA)	350	476	IPR003959	GO:0005524\|GO:0016887
	Mepo4g01670	980	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	215	551	IPR027417	-
	Mepo4g01670	980	MobiDBLite	consensus disorder prediction	1	83	-	-
	Mepo4g01670	980	MobiDBLite	consensus disorder prediction	1	21	-	-
	Mepo4g01670	980	MobiDBLite	consensus disorder prediction	441	462	-	-
	Mepo4g01670	980	MobiDBLite	consensus disorder prediction	33	48	-	-
	Mepo4g01670	980	MobiDBLite	consensus disorder prediction	67	83	-	-
	Mepo4g01670	980	MobiDBLite	consensus disorder prediction	286	343	-	-
	Mepo4g01670	980	MobiDBLite	consensus disorder prediction	441	460	-	-
	Mepo4g01670	980	CDD	HLD_clamp_RFC	497	555	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo4g01670	344	544	Core DNA Replication Machinery Family	AT5G22010	31.481	6.40e-14	74.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo4g01670	K11269		-	gmx:100791474	1310.05

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo4g01670	4	21950002	21967874	Mepo4g01670	4	21950002	21967874	ECH