Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01645 ATGAAGAGTTCTTTCTCTTCACCCTATTTCCATTTTCATCATTCAATCGATCACAAACCCAAAAACAACTACGAATATCATCATGTTCATGATATTGAAATTCAGAAACAAGGTACAAACCCTACGTTCAAGCCCTATAGTTTTTCTGTACACTCTCCTGAGCAAATCACTCACAACATCATTAACAAACACTATTTTTCACCTTCTTCTCACCATTCGTTTGATAAACCCAAAAACAGCCATGATCATTATCACAACCGGACTCTTGAAATTGATAAGAAAAACCCAGGTTCAAGAATCTACAGTTGTGAGTTTTGTCACAAAACATTCACCTCTGGTAAATCACTTGGTGGCCACAAAACCATTCATCGCTCCTCCAACTCTCTTCTTCAACCTAAAACAAACAAACAGATCCATGATCATGCTGTGAATAACGGCAGCACCTTGAAGAAGACTAATCATGATGATGGGAAACTGAAGAACCATACATGTGATGTTTGTAACAAGGTTTTTTCATCCAACCATGCTTTGAATGGACATATGAGATGTCATACTCAAAAGGGTTCGAAGAAAAGTGTTATTATCCACTCACCGACTGCCCCATCTTCCATGGAACAAAGTCATCTTGAGTTTCTACCAGCTACTGACTTGTCAAATTACTTGCCGCCAATTTCGTGTAAGACCAAAAAACGGAGTCCCAGGAGAAGACATATTGCTGATGATGATGAGGAAATCACTATTGCTGCAAAAACATTGTTATCTATGTCTTACGGGGGTTATGAGGGATCAACTAAAAGGCAGAAGATTTCCAGCAATACGGTGGATGATAATGAGAAGATGAAGGAACAAGGTGTGCTGCTAACAAGGTGTGTTTGCCACAACGAAAAGAACTTGGTGCTGAGGTTGAAGATTCCTAAAGACAGGATTTTTCAAAAATCACATGATTCCAAGGAACCTGCAGGCTCTAACCGTGATATTGAAGGCAAGAAGAATGTTAGCGAAGATGAAACCGAATTAGGGCCAAGAGTTGTCAGGAATTTTGATTTGAATGAGCTTCCAAGTGATGATTTTGAAGATGAAACCAATTAG 1089 0.3903 MKSSFSSPYFHFHHSIDHKPKNNYEYHHVHDIEIQKQGTNPTFKPYSFSVHSPEQITHNIINKHYFSPSSHHSFDKPKNSHDHYHNRTLEIDKKNPGSRIYSCEFCHKTFTSGKSLGGHKTIHRSSNSLLQPKTNKQIHDHAVNNGSTLKKTNHDDGKLKNHTCDVCNKVFSSNHALNGHMRCHTQKGSKKSVIIHSPTAPSSMEQSHLEFLPATDLSNYLPPISCKTKKRSPRRRHIADDDEEITIAAKTLLSMSYGGYEGSTKRQKISSNTVDDNEKMKEQGVLLTRCVCHNEKNLVLRLKIPKDRIFQKSHDSKEPAGSNRDIEGKKNVSEDETELGPRVVRNFDLNELPSDDFEDETN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01645 362 MobiDBLite consensus disorder prediction 311 362 - -
Mepo4g01645 362 Gene3D Classic Zinc Finger 99 184 - -
Mepo4g01645 362 MobiDBLite consensus disorder prediction 311 342 - -
Mepo4g01645 362 Pfam C2H2-type zinc finger 101 125 - -
Mepo4g01645 362 Pfam C2H2-type zinc finger 162 185 - -
Mepo4g01645 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 189 IPR013087 -
Mepo4g01645 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Mepo4g01645 362 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Mepo4g01645 362 FunFam Zinc finger protein 158 185 - -
Mepo4g01645 362 SMART c2h2final6 162 184 IPR013087 -
Mepo4g01645 362 SMART c2h2final6 101 123 IPR013087 -
Mepo4g01645 362 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Mepo4g01645 362 SUPERFAMILY beta-beta-alpha zinc fingers 99 184 IPR036236 -
Mepo4g01645 362 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 76 358 IPR044653 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01645 Mepo-Chr4 21549681 21550769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01645 100 184 C2H2 Transcription Factor Family AT5G04340 37.647 1.70e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g01645 zf-C2H2_6 6.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01645 - - cam:101497742 154.451