Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01640 ATGGAGGCCCTTGGTTCTGTGGACGACCTCTTGGATTTCTCATCTGACATAGGTGAGGATGATGATGATGACAAACCTAAGAAAGCCTTCCCTTCACTCAACCCAGAATGCAGCGATCCACCTTCACTTAATCCGTTGGCCCTGGATGATCCCAACCATTCACTTTCTGAGGAGGCTGCAGAAGAGGAGCTTGAATGGCTGTCCAACAAAGATGCATTTCCAGCTGTTGAAACATTTGTTGACTTGTCCTGTATTCAACCGGATCTTTTGAAGCATCAAATGACATCCCCAATGCTCGAGAACAGCACAAGTAGCAGCAACAGCAATAACAGTTCCAACAGCATTACCCTCTTAAGTGGCTACAATCACATGAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTAGCAAGCCTCGCCTTGGCCTTGCTGATGCCTCAAACCTGCAATTCCCGTGGAAACAACCGAGTTCCAAAACTTCCAAAGAGAAAGTGAAACAAACCCCAACCATTGGGAGGAAATGTCATCATTGTGGAGTTGATGATACTCCACAATGGCGTGCAGGTCCAAATGGTCCAAAGACACTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTACCTGAATACCGTCCTGCAAATAGCCCAACTTTTCGCAGTGACGTGCATTCTAATTCCCACAGGAAAGTAGTGGAGATGAGGAAGCAGAAGGGAATGGGAATGGGTTGA 735 0.4735 MEALGSVDDLLDFSSDIGEDDDDDKPKKAFPSLNPECSDPPSLNPLALDDPNHSLSEEAAEEELEWLSNKDAFPAVETFVDLSCIQPDLLKHQMTSPMLENSTSSSNSNNSSNSITLLSGYNHMKFPVRARSKSRSKPRLGLADASNLQFPWKQPSSKTSKEKVKQTPTIGRKCHHCGVDDTPQWRAGPNGPKTLCNACGVRYKSGRLVPEYRPANSPTFRSDVHSNSHRKVVEMRKQKGMGMG 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01640 244 ProSitePatterns GATA-type zinc finger domain. 174 199 IPR000679 GO:0006355|GO:0043565
Mepo4g01640 244 MobiDBLite consensus disorder prediction 97 116 - -
Mepo4g01640 244 PANTHER GATA TRANSCRIPTION FACTOR 6 240 - -
Mepo4g01640 244 MobiDBLite consensus disorder prediction 1 63 - -
Mepo4g01640 244 ProSiteProfiles GATA-type zinc finger domain profile. 168 204 IPR000679 GO:0006355|GO:0043565
Mepo4g01640 244 Pfam GATA zinc finger 174 207 IPR000679 GO:0006355|GO:0043565
Mepo4g01640 244 CDD ZnF_GATA 173 221 IPR000679 GO:0006355|GO:0043565
Mepo4g01640 244 MobiDBLite consensus disorder prediction 131 167 - -
Mepo4g01640 244 FunFam GATA transcription factor 162 243 - -
Mepo4g01640 244 MobiDBLite consensus disorder prediction 149 164 - -
Mepo4g01640 244 Gene3D - 169 240 IPR013088 GO:0006355|GO:0008270
Mepo4g01640 244 SMART GATA_3 168 218 IPR000679 GO:0006355|GO:0043565
Mepo4g01640 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01640 Mepo-Chr4 21502485 21505734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01640 61 244 C2C2-Gata Transcription Factor Family AT3G24050 42.584 1.97e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo4g01640 GATA 1.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01640 - - psat:127090991 371.703