Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01637 ATGTCATGTCCGAATGCAAAACATGGTTGCAAGGAGAAAATAAGTTACACTGATAGGAAGCATGAAGAAGAATGCATCTATGTGCTATGTTACTGCCCCCTTTCAGGATGTGACTTTGCTGCATCATCAGAAGCGTTGTCCAACCATTTCAGGCATAAACATGGGGATTCAAAAATTAAATTTTCTTATGGTTACTCCTTCATTGTCTCCTTGAAGTCTAATGATGAAATTATTGTTCTTCAAGAGGAATATGATGGTAAACTATTTATTCTCAATAATAGAAGTATGCTTTTGGGAAATGCAGTCAATCTTTGCTGCATTGGTCCTAACTCTTCTGAGTCCAATTATAGTTATGATATATTGGCTAGGTCTCAGAATTGCAAACTGAATTTACAGTCTTTTGCAAAGAACGTCCAACAAGTTACTTTGGCAACTCTTTCATCAGAGTTGCTTGTGATTCCATTTGGTTCTTCTGAACCTCTAAAGCTAGATATTTGCATAACCCCCATGATACAAATCTACATAATGACCCAGACTGGTAGGAGGTACCCTCTAAGGGTTGAAAGTTCGGACACAATAGTCGATGTGAAGAAGAAGATTCTTGACAAGGAAGATATCCCGGTGCACCAGCAACGTCTGATCTTTGGCGGTAAGGTACTAGATGAGGACCTGACCCTTGTCGATTACAACATCCAAGAGAAGTCAACCATCCACCTCTGCCTCCGCCTCCTTGGGAACTAG 741 0.4022 MSCPNAKHGCKEKISYTDRKHEEECIYVLCYCPLSGCDFAASSEALSNHFRHKHGDSKIKFSYGYSFIVSLKSNDEIIVLQEEYDGKLFILNNRSMLLGNAVNLCCIGPNSSESNYSYDILARSQNCKLNLQSFAKNVQQVTLATLSSELLVIPFGSSEPLKLDICITPMIQIYIMTQTGRRYPLRVESSDTIVDVKKKILDKEDIPVHQQRLIFGGKVLDEDLTLVDYNIQEKSTIHLCLRLLGN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01637 246 Gene3D - 167 246 - -
Mepo4g01637 246 SUPERFAMILY TRAF domain-like 2 168 - -
Mepo4g01637 246 ProSiteProfiles Ubiquitin domain profile. 171 246 IPR000626 GO:0005515
Mepo4g01637 246 Pfam Seven in absentia protein family 3 148 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mepo4g01637 246 PRINTS Ubiquitin signature 223 244 IPR019956 -
Mepo4g01637 246 PRINTS Ubiquitin signature 181 201 IPR019956 -
Mepo4g01637 246 PRINTS Ubiquitin signature 202 222 IPR019956 -
Mepo4g01637 246 ProSiteProfiles Zinc finger SIAH-type profile. 1 55 IPR013010 GO:0008270
Mepo4g01637 246 SUPERFAMILY Ubiquitin-like 154 246 IPR029071 -
Mepo4g01637 246 FunFam 2'-5'-oligoadenylate synthase-like protein 2 170 243 - -
Mepo4g01637 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 50 IPR013083 -
Mepo4g01637 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 1 169 IPR044286 -
Mepo4g01637 246 SMART ubq_7 171 242 IPR000626 GO:0005515
Mepo4g01637 246 ProSitePatterns Ubiquitin domain signature. 197 222 IPR019954 -
Mepo4g01637 246 Pfam Ubiquitin family 173 243 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01637 Mepo-Chr4 21494322 21496098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01637 171 246 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 60.526 2.08e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01637 K04506 - mtr:11432566 316.62