Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01632 ATGTCGTCGTCGACTCATTCTCAAGGTTTTGGGAGGCCCTCTTCAATCCAGCAAAGGGTAATTGCTCCTTTCTGTGAAGGTTTGGACGTGATTCTACAAGATCCATCTGGAACTGGGATGTTAGAAACATTCTGTATTGGAATTCTGAAGAAGCTTGATTATGGATTGGTTCATTGCCAGGCTTTGGTTTTGGCCCCAACCATTGAGCTGGTTTTACAGATTAAGGAGGTTATGCAAGATCTTGGTAGATTCCATGGTGTAAGGATTCATGCATGCGTCAGGGGGACAAGTGTTCCTAAGGAGGATCGTCAGCGCTTTCTCAAAGTTGGTTATAACAGTTACATTATTGAAGGTACTTCGAATGTGTATGACATCATCGACATGGATGGTCAATTCATTTTCAAAGGTGGTGTTCACATTATTGTTGGTACTCCGGGGTGTGTGTGTGACGTGCTGCAGAGGGGGCGTACTCGCCTAGATTGCATAAAGATGTTTGTTATCGACGAGGTTGATGAAATGCTTTCACTTGGCTTCAAGGATAAGATCGATGAAATCCTCAAGCTACTACCCTGCGAAATTCAGGTTGGAGTAATCTCTGCTACAATGCCACCTGAAGCCCTTGAGATTACTAGGAAGTTCATGAAAAAGCCTGTGACAATTCAGGCAAAGCCTGATGAGCTGACCCTTGAGGGTATCAAGCAGTTTTATGTCGATGTTGAGAAGGAAGAGTGGAAGCTAGAGACACTATGCGACATCTTTGAGCTGACCGTTAAAGTTAAATCCATCACTCATTGCATCGTCTTTGTGGATACCAACTGCAAAGCGGACTGGCTCATGGACAAGATGCAAAGCAGAGATCATAAAGTGTGGGTCATCCAGAGTCACATGGACCAGAACACTAGGGATATCATTGTGCGCGAGTTTTTTTCCCAGTCTGGCTCTCCTCATGTTCTCATTACCACAGACCCCTTGGTTTGTGGTACAGATGTGCATAAAGTGTCTCTGATCGTAAACTATGATCTCCCAGCTGCGCCTGAAAACTATCTTTATCGTATAGGCCGGAGTGGGCAATTTGGAAGATGTGTTGCTATAAACTTTATGACAAAGGCTGAGGCTACAATGATCATAGATATTCAGAAATTCTACAATATGGTTATAGAGGAGCTGCCATACAATTTTGATGATTTGCTCTGA 1194 0.4363 MSSSTHSQGFGRPSSIQQRVIAPFCEGLDVILQDPSGTGMLETFCIGILKKLDYGLVHCQALVLAPTIELVLQIKEVMQDLGRFHGVRIHACVRGTSVPKEDRQRFLKVGYNSYIIEGTSNVYDIIDMDGQFIFKGGVHIIVGTPGCVCDVLQRGRTRLDCIKMFVIDEVDEMLSLGFKDKIDEILKLLPCEIQVGVISATMPPEALEITRKFMKKPVTIQAKPDELTLEGIKQFYVDVEKEEWKLETLCDIFELTVKVKSITHCIVFVDTNCKADWLMDKMQSRDHKVWVIQSHMDQNTRDIIVREFFSQSGSPHVLITTDPLVCGTDVHKVSLIVNYDLPAAPENYLYRIGRSGQFGRCVAINFMTKAEATMIIDIQKFYNMVIEELPYNFDDLL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01632 397 Gene3D - 225 397 IPR027417 -
Mepo4g01632 397 Pfam Helicase conserved C-terminal domain 245 358 IPR001650 -
Mepo4g01632 397 Gene3D - 1 224 IPR027417 -
Mepo4g01632 397 PANTHER RNA HELICASE 8 381 - -
Mepo4g01632 397 CDD SF2_C_DEAD 232 366 - -
Mepo4g01632 397 SMART helicmild6 276 359 IPR001650 -
Mepo4g01632 397 SMART ultradead3 9 235 IPR014001 -
Mepo4g01632 397 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 378 IPR027417 -
Mepo4g01632 397 Pfam DEAD/DEAH box helicase 15 205 IPR011545 GO:0003676|GO:0005524
Mepo4g01632 397 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 231 397 IPR001650 -
Mepo4g01632 397 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 21 220 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01632 Mepo-Chr4 21442591 21444368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01632 6 397 Eukaryotic Initiation Factors Gene Family AT1G72730 58.524 3.76e-158 449