Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01622 ATGTCTCATTCCAAAGATAACCAATTTATGACTAACATTGCCAAGGAGTTCCCTAACTTCTTCAAAGTCTTCCTCACAAAGAAGCACTCTGATAGAATGTTTATCCCTAAGGCTTTTGTGAAGCTGATGCTTTCAAAACAAAGGCTATTGAAGGATTTTATCCTAAGAAATCATAAAGGAAGTGATTGGCATGTCAAAGTGCGTCCTATTGGCAACAAACTTTATTTTGATGGAGATTGGAAACTATTTAGAAAAGAAAATTCTTTAGCGGATAATGACTTCCTTGTTTTCACACATATTGAAAACAATGTATTCAAGTTCAAAATCCTTGAACTATCCTCAATGTGTCAAAAGATGAAGGTGATGGACGAGGAGGAAAAGACTGATACGATAGAGGATGAGGAAGAGAAAGATGGTGATGATGATGATTACACAATGATAGAGGAAGAAGAAGATGGTGATGATAACGATGACGTTGTTGATGAGGAGGAGGACGAGGATGTTGCTGATATAATAATGAAAGAAAAAAGGAATAAAGGAGATGGTAAGGGAATCAGCAGAAGTTGTGAACATCAACATTGTAGAACCTCCAAAACATGGAGCAATGGGAGTAGCGCTGCAGCTCCAAATCTTGAAGATGATGAAATTGATGCTGAAATGTATATTCAGCCAGGAAATCCATACTTCTATGCAAAACATTATCATTACAGACCAAACATATTGAATATTTCGAAGAATGTCATCAAGAATTTCTGCCTTTGCTTTACAAAGCATATCACCCTTGTATGTTGCCACTGCAAGGATGTTGAAAGTAACAGAATAGAAGCATATCATCATATATTGCCGCAAATGAGCACAAAACATATCGAAAAGAGAGGAGAAATACGTAAATGGAGAGATGGTCGAGTATTTGTGCAAGGGTGGACGGAATTTTGTCAAAAGAGCGAGATCACAGAAAATGATAGATGCTTGTGTGAACTTGTGTTGCGTAAAGGCAAATCAATTGAAATGCTAAGGGTGCACGTTGTTAGGGAGAAATGA 1041 0.3718 MSHSKDNQFMTNIAKEFPNFFKVFLTKKHSDRMFIPKAFVKLMLSKQRLLKDFILRNHKGSDWHVKVRPIGNKLYFDGDWKLFRKENSLADNDFLVFTHIENNVFKFKILELSSMCQKMKVMDEEEKTDTIEDEEEKDGDDDDYTMIEEEEDGDDNDDVVDEEEDEDVADIIMKEKRNKGDGKGISRSCEHQHCRTSKTWSNGSSAAAPNLEDDEIDAEMYIQPGNPYFYAKHYHYRPNILNISKNVIKNFCLCFTKHITLVCCHCKDVESNRIEAYHHILPQMSTKHIEKRGEIRKWRDGRVFVQGWTEFCQKSEITENDRCLCELVLRKGKSIEMLRVHVVREK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01622 346 ProSiteProfiles B3 DNA-binding domain profile. 18 113 IPR003340 GO:0003677
Mepo4g01622 346 CDD B3_DNA 18 110 IPR003340 GO:0003677
Mepo4g01622 346 Gene3D - 211 346 IPR015300 -
Mepo4g01622 346 MobiDBLite consensus disorder prediction 123 162 - -
Mepo4g01622 346 SUPERFAMILY DNA-binding pseudobarrel domain 16 111 IPR015300 -
Mepo4g01622 346 MobiDBLite consensus disorder prediction 127 162 - -
Mepo4g01622 346 Pfam B3 DNA binding domain 20 109 IPR003340 GO:0003677
Mepo4g01622 346 PANTHER B3 DOMAIN-CONTAINING 15 340 - -
Mepo4g01622 346 Gene3D - 11 116 IPR015300 -
Mepo4g01622 346 SUPERFAMILY DNA-binding pseudobarrel domain 222 344 IPR015300 -
Mepo4g01622 346 SMART B3_2 20 113 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01622 Mepo-Chr4 21367910 21370615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01622 17 345 B3 DNA Binding Superfamily AT3G06160 22.419 7.84e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g01622 B3 1.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01622 - - mtr:120578114 556.984