Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01621 ATGACTAACAATGCAAAGGAGTATCCTGGCTTTTTCAAAGTCTTCCTTAAAGATAAGCACTCTGAAAGAATGCTTATCCCAAATGCTTTTGTGAACTTGGTGCGTTCAAGAAGGAGGGTAATAAAGGATTTTATCCTAAGAGATCGTAGAGGAAGAGATATGCATGTGAAAGCGCGTCGTATTGGTGACGAGTTTTATTTTGATCATGGTTGGAAGAAATTTAGAGAAGAAAATTGTTTAGTGGAGAATGACTTCCTTGTTTTTACTCATATTGAAAACAATGTATTCAAATTCAAAATTCTTGAATTATCAACAATGTGTGAAAAGATGCAGGTGATGGATGAGGAGGAAAATAATAATATGATGGAAGATGAGGAAGAGGATGGTGATGATGTCGATTATGATGACAATGATGTTGATGATAATGATGCTGAAGCAGGTGAGGATAGTGACGATGATGGTGACGATGAGAGGGATGATGGTGACGATGATATGATGGGAGAGGAAGAAAAAGATGATACGGATGATGAGGTTAGTGACGATGATGTCTCTGAGAATATAATGAAAGAAAAACATAGTGAAAATGTGTACAAGGAAAATAGTAAAAGTGGGCATCAACATTGTAGAACCTGCAAAGCATGGGACATTGGAAGCAGCTCTGCAGGTTCAAACCTTGAAGATGATGAAATTGATGCTGAAATGTACATTCAACCGGGAAATCCACACTTCATTGCAAAACATAGTCTTTACAGACCCAATGAATTGCATTTTCCGAAGAATGTAATTAAGGATTTCTGTGTTTGCTTCACAAAATATGTCAACCTTGTATGTTGTCACTGCAAGGATATTAAAAGAAATGAAATAGAAGCCTACCATCACATCTTGCCACAAATCAGCACAAGACATACCGAAAAGAGAGGCAAAATACGTACTTGGAAAAATGGCCGAGTCTTGGTGCTAGGGTGGCAAGATTTTTGTACAAAGTGCAAGATCACGGAAAATGATAGATGCTTGTGTGAACTTGTAATGCGTAACGGAGAAGCAATAGAAATGATAAGGGTGCACATTGTTAGAAAGGTTAACAAGAAATGA 1092 0.3736 MTNNAKEYPGFFKVFLKDKHSERMLIPNAFVNLVRSRRRVIKDFILRDRRGRDMHVKARRIGDEFYFDHGWKKFREENCLVENDFLVFTHIENNVFKFKILELSTMCEKMQVMDEEENNNMMEDEEEDGDDVDYDDNDVDDNDAEAGEDSDDDGDDERDDGDDDMMGEEEKDDTDDEVSDDDVSENIMKEKHSENVYKENSKSGHQHCRTCKAWDIGSSSAGSNLEDDEIDAEMYIQPGNPHFIAKHSLYRPNELHFPKNVIKDFCVCFTKYVNLVCCHCKDIKRNEIEAYHHILPQISTRHTEKRGKIRTWKNGRVLVLGWQDFCTKCKITENDRCLCELVMRNGEAIEMIRVHIVRKVNKK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01621 363 Gene3D - 225 362 IPR015300 -
Mepo4g01621 363 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Mepo4g01621 363 SMART B3_2 11 104 IPR003340 GO:0003677
Mepo4g01621 363 MobiDBLite consensus disorder prediction 121 182 - -
Mepo4g01621 363 CDD B3_DNA 9 101 IPR003340 GO:0003677
Mepo4g01621 363 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Mepo4g01621 363 Gene3D - 3 107 IPR015300 -
Mepo4g01621 363 SUPERFAMILY DNA-binding pseudobarrel domain 302 358 IPR015300 -
Mepo4g01621 363 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Mepo4g01621 363 PANTHER B3 DOMAIN-CONTAINING 6 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01621 Mepo-Chr4 21358564 21361201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01621 9 358 B3 DNA Binding Superfamily AT3G06160 23.647 1.16e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g01621 B3 6.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01621 - - mtr:120578114 382.104