Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01582 ATGGCTACTGCAGCAGGCATGACTTCACTGTTTTCATCTTCCATCAACACTGTCAAATGTCTACGTTCCAAAAACTCCTCATTAGATACATCCTCAAACCGCATGTTTGTATCTTTGATCTCACAATCCTCAGTGGAACCTTTGTCCATTGGTACAACAGTTGCACACAAGTTATGGTTTCCTAGAGTTTCTGTTGCTGTTGGACAAGAAGAGGCTGTTGTGGATGTTGAGGATGAAGAGAAAGTTGTAGTGGAAGAGGAAGAAAAAGAAGAAGAAGTAGTAGTAGAAGAGGAGAATGGAGGGGAAACTGTAGCAGAAGTAGACACTAGGACTAAGCTTTATTTTGGTAATTTGCCTTATAGTGTTGATAGTGCACTACTTGCAGGGTTAATTGAGGAGCATGGTAGCGCAGAATTAATTGAGGTTCTTTATGACAGAGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGCTGTGTTGAAGATTGTAATGCAGTAATTCAAAATCTTGACGGGAAAGAGTTCATGGGGCGAACCTTGCGGGTGAATTTCTCTGACAAACCTAAACCAAAAGAACCATTGTACCCTGAAACTGAGTACAAGCTTTTTGTTGGGAACTTGTCTTGGACAGTAACTTCTGAGAGTCTTACACAAGCCTTTCAAGAACATGGAACTGTTGTTGGAGCTAGGGTGTTATATGATGGCGAAACCGGAAAGTCTCGTGGCTATGGCTTTGTTTCCTATGCCAATAAAGCAGAAATGGATGCCGCCCTTACAATCATGGATAATGTGGAACTAGAAGGACGAACATTGCGAGTAAGCTTGGCTCAAGGAAAACGTTCATAA 852 0.4167 MATAAGMTSLFSSSINTVKCLRSKNSSLDTSSNRMFVSLISQSSVEPLSIGTTVAHKLWFPRVSVAVGQEEAVVDVEDEEKVVVEEEEKEEEVVVEEENGGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEHGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLSWTVTSESLTQAFQEHGTVVGARVLYDGETGKSRGYGFVSYANKAEMDAALTIMDNVELEGRTLRVSLAQGKRS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01582 283 PANTHER OS02G0815200 PROTEIN 33 282 - -
Mepo4g01582 283 SUPERFAMILY RNA-binding domain, RBD 108 194 IPR035979 GO:0003676
Mepo4g01582 283 CDD RRM2_NsCP33_like 203 278 - -
Mepo4g01582 283 FunFam 28 kDa ribonucleoprotein, chloroplastic 193 283 - -
Mepo4g01582 283 SUPERFAMILY RNA-binding domain, RBD 198 282 IPR035979 GO:0003676
Mepo4g01582 283 Gene3D - 67 193 IPR012677 -
Mepo4g01582 283 Gene3D - 194 283 IPR012677 -
Mepo4g01582 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Mepo4g01582 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Mepo4g01582 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 274 IPR000504 GO:0003723
Mepo4g01582 283 FunFam 31 kDa ribonucleoprotein, chloroplastic 69 192 - -
Mepo4g01582 283 SMART rrm1_1 203 276 IPR000504 GO:0003723
Mepo4g01582 283 SMART rrm1_1 112 185 IPR000504 GO:0003723
Mepo4g01582 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01582 Mepo-Chr4 20822955 20825646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01582 51 281 Eukaryotic Initiation Factors Gene Family AT2G23350 29.134 3.46e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01582 - - gmx:100820203 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03595 3 45733645 45735900 Mepo4g01582 4 20822955 20825646 PCT