Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01562 ATGGCTACCCAAATGAGCAAAAAGCGAAAGTTCGTCGCTGACGGAGTTTTCTTCGCTGAATTGAATGAGGTTTTAACAAGAGAGCTTGCTGAAGATGGTTATTCTGGTGTTGAAGTTAGGGTTACCCCTATGCGCACTGAGATCATCATCAGGGCTACTCGTACCCAAGCTGTTCTCGGTGAGAAGGGAAGGAGGATTAGAGAGCTGACCTCAGTTGTGCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAGCTTTACGCTGAGAAGGTCAACAACAGGGGACTTTGTGCCATTGCTCAGGCCGAGTCTCTTCGCTACAAGCTGCTCGGAGGTCTTGCTGTTCGTAGGGCCTGCTATGGTGTGTTGAGGTTTGTCATGGAAAGTGGTGCCAAGGGATGCGAGGTTATTGTCAGTGGAAAATTGAGGGCCCAGAGAGCCAAATCCATGAAGTTCAAGGACGGTTATATGATTTCTTCTGGACAACCAGTCAAGGACTACATTGACTCTGCTGTGAGACATGTGCTCCTTAGACAGGGTGTTCTCGGCATTAAGGTGAAGATCATGCTCGACTGGGATCCTAAAGGAAAGCAGGGCCCTAAAACTCCCCTCCCTGATATTGTCACCATTCACACTCCAAAGGAAGAGGAAGAGTACATCAGGCCTGCTGCTGTTGTGGCCAATGATATTGAGGTTCCTGTCCCAGTCCCTGTTGCTTGA 720 0.4875 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPVA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01562 239 Gene3D - 93 219 IPR036419 -
Mepo4g01562 239 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Mepo4g01562 239 Pfam KH domain 20 93 IPR004044 GO:0003723
Mepo4g01562 239 CDD KH-II_40S_S3 5 95 - -
Mepo4g01562 239 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Mepo4g01562 239 FunFam 40S ribosomal protein S3 93 228 - -
Mepo4g01562 239 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Mepo4g01562 239 Gene3D - 1 91 IPR015946 -
Mepo4g01562 239 FunFam 40S ribosomal protein S3 1 92 - -
Mepo4g01562 239 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Mepo4g01562 239 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Mepo4g01562 239 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Mepo4g01562 239 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01562 Mepo-Chr4 20596451 20599242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01562 1 233 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 88.841 4.55e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01562 K02985 - gmx:100800747 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01562 4 20596451 20599242 Mepo4g01562 4 20596451 20599242 ECH