Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01535 ATGGAAAACGACAATGTCGTTTTTAGAAACGGCAATCCCGTTCTCGTTGCTCAGCCTCTCACCGTCGTCCGTGCCGGTGGTGGCGCTCGCGTTCTCGCAACGCCGCCGAATCAAAACCCTAACTCCGACGAGTCTCATGCATGCAAAGCTTCGATCATCAAAGTCAAGGATGAACCTCAAGAATTTGAAGATGAAGCAAAATCTGTCACCGTCGCTTTTCAACCTCCGGCGGCGGAGACGTTGGTGAAGTGTGAGACGGTTTCTGATGAACCACGTTCGATGCTTGCGTTTAATGATTTTTTGAAAGCTACGAATACGAAAGTTGCTTCTGTTGATGAATCGTTGAAATCAATGGAAGCTGAACCAACGATTCAAACGAAGGTAGAAAGTTCTGATGTTGATGTAGTTTTCGAGACGCAAGAATCGGTGAAATCTATGGAAGAAGTTCCTAATCTCAATGTGGTTTGTGATACACAGGAATCGGTTATAGTTGAACCGGTTAAACAACCAACATTGGCTGAACCGGTTTGTGCAGAGAAGAAAACCGTTTGTGATGATGAGGTGGAGGTGTTGAAGGTAGTGAAGGGGAAAGAAGCTGTGAGTGATGAAGTTAAGGTTTTGAAAGTGGTGAAGAAGGAGGTAGTTGAAGAGAAGAAGATTGTGATTCCGAATCTTGAGGATGGTGAGTTTCCTGTTGAGCCTGGGTGGTCATTATTGGGACGGAAGATTGAGATTGCTACTTCTACTGCTAAAGGAGTGAGGAGATTGGTGGATAATGAGATTATTCATTTTGATTTTCCAAATCCGCATACATTGTATAAGTTTCAATGGATCATTCGTGTCTCGACCAAACGTTCTGGAGTGGTTGGGAGGCTGCCAATGGAATGGGCTAAATCTGTGATTCCTCTTGTGCAATCTGGAAATGTTAAGGTTCGAGGACGATGCATTGCTACGCCGTATAAGCTTGAAATGATGCAAGAAATAATGTTGTTAGTAAGTTTTTATGTTCATCACTCTGTATTCTCCGAGTCTGTTGATACCTCTTGGAGACTAGAGGCTTGTGGTAACGTTAACTCTGCTGCATATCCACTGCTTACACTGTTAAATATGCTAGAGATTGAGCCATATAGGAAGGCTGATTTCACCCCTGAGGAAATGAAGGCTCGAAAGCGGGTGCTTAAACTTGACTCAGATGAAGTTTCAGTAATTCCTGTCAATAAGCGAAGAAAAGGTGTCACTGAGTCACTTCCAGCAACAACTGAGGATGAACAAGCACTTTCGGAGTCAGCTTTGAACAAACTTGTTGGAGCTGCAGAAGTCTTTGACCTGGAGGAGAAGGAAGCCCCAAAGACACTGATGTGTAGCCTAAAGCCTTACCAGAGTCAAGCTCTGTATTGGATGACAAAAATCGAGAAGGGAGGTGATGATGAAAATGCTGAGAGAAATCTACATCCTTGCTGGTCAGCCTACAATATATGCAATGGGAGGTCAATATACGTCAACATATTTACTGGAGAGGCAGCAAAGAAATTTCCACAAGCAATACAGATGGCAAGAGGAGGAATTTTGGCAGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCACTGATTCTTAGTAATCCAGGCAGGTTGAAGTCAGAAGACAGTGATGGAGAGAGCGTATATGACAATATTTTTTCAGCTAAGAGGAGGAATGTTAACCCATCGTCTAATTTAGAAGGTGGCACTTTAATTGTTTGTCCTATGGCGTTGTTGGGTCAGTGGAAGGATGAACTTGCAACACATTCAAAACCAGGCAGCATATCCATATTTGTTCATTATGGTGGGGGCAGAACCAATAATCCTGATTTGCTGTTAGAGTATGATGTTGTCTTGACAACTTATGGTGTGCTATCAGCTTCATATAAAAGTGAAAGAGAGAATAGCATCTACCACAGGGTCCAATGGTACAGAGTGGTGCTAGACGAAGCTCATCATATAAAAGCCCATAAAAGCCAGGTTGCTGAGGCTGCTATTGCTCTGTCATCACACTGCCGCTGGTGTCTAACTGGAACACCACTTCAGAATACCTTGGAAGATCTATTCAGTCTCTTGTCTTTCTTGCGTGTGCAACCTTGGTGCAGCTGGCAGTGGTGGACTAAGTTGGTTCAAAAGCCCTATGAGCAGGGTGATCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTGAGGACATTGATGTTAAGGAGAACCAAGGAAACAAAGGATAAAGAAGGAAGGCCTATACTTGTCCTGCCACCAACTGATATTCAATTGATTGAGTGTGAGCAGTCAGAATCTGAACAGGACTTCTATGATGCTCTCTTCCTGAGAGCTAAAGTCCAATTTGAGCAGTATGTTGCACAAGGAAAGGTTCTTAACCACTATGCAAATATCCTTGACTTACTAATGCAGTTGAGACGGTGCTGCAACCATCCGTTTTTGGTCATGAGTGGAAGTGATACTGCCAAGTATGCAGACTTGAGCAGACTTGCAAGAAAATTCCTCGAGTCTCATACTGAATCATCTGATATGTGCTGCGAAAGTGATGCACCGCAAAATGCAGAATTGAATAAACTTGCTAGTAATTTCCTACAGAATTCTGCGTCTGCTTCAAACTCTATCCAATCTCGTGGATACATCGATGAGGTTTTGGGGCATATTCAAAAGGGTGAAACTGTAGAATGCGCTATATGCATGGAATCACCAGATGATCCTGTTTTTACACCATGTGCACATCAGTTTTGCAGAGAATGCCTATTCAATTGTTGGGGTACCTCAATGGGTGGTAAGTGCCCAATCTGTCGTCAAATACTCAAGAAAAACGATCTTATTGTACTTCCATCAGAAAGCCCATTCAAGGTTGACATTGAGAACAATTTGACCGAGTCTTCAAAGGTTTCTAAGCTCTTTGATTTCTTAGAACATAGTCAGAAATATCCTGATGAAAAAAGTATTGTTTTTAGTCAATGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGGAGAGGGATAGGATTCTTAAGATTTGATGGAAAGTTGACTCAAAAGCAGAGAGAAAAAGTTCTGAAAGAATTCAATGAAACAAAAGAGAAAAGGGTTTTGTTGATGTCGCTAAAAGCTGGTGGTGTGGGCTTAAACTTGACTGCGGCCTCAAATGTTTTCCTAATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATTGGGCAAAAGCAAAGGGTTACTGTAAGAAGATTCATCGTCAAGGGAACAGTGGAAGATCGGTTGCAACAAGTGCAAGCCAAGAAACAGAAGATGATATCTGGTGCCCTCACTGATGATGAAGTTCGGACTTCCAGGATTCAAGACCTCAAAATGCTTTTCTCTTAG 3420 0.4254 MENDNVVFRNGNPVLVAQPLTVVRAGGGARVLATPPNQNPNSDESHACKASIIKVKDEPQEFEDEAKSVTVAFQPPAAETLVKCETVSDEPRSMLAFNDFLKATNTKVASVDESLKSMEAEPTIQTKVESSDVDVVFETQESVKSMEEVPNLNVVCDTQESVIVEPVKQPTLAEPVCAEKKTVCDDEVEVLKVVKGKEAVSDEVKVLKVVKKEVVEEKKIVIPNLEDGEFPVEPGWSLLGRKIEIATSTAKGVRRLVDNEIIHFDFPNPHTLYKFQWIIRVSTKRSGVVGRLPMEWAKSVIPLVQSGNVKVRGRCIATPYKLEMMQEIMLLVSFYVHHSVFSESVDTSWRLEACGNVNSAAYPLLTLLNMLEIEPYRKADFTPEEMKARKRVLKLDSDEVSVIPVNKRRKGVTESLPATTEDEQALSESALNKLVGAAEVFDLEEKEAPKTLMCSLKPYQSQALYWMTKIEKGGDDENAERNLHPCWSAYNICNGRSIYVNIFTGEAAKKFPQAIQMARGGILADAMGLGKTVMTIALILSNPGRLKSEDSDGESVYDNIFSAKRRNVNPSSNLEGGTLIVCPMALLGQWKDELATHSKPGSISIFVHYGGGRTNNPDLLLEYDVVLTTYGVLSASYKSERENSIYHRVQWYRVVLDEAHHIKAHKSQVAEAAIALSSHCRWCLTGTPLQNTLEDLFSLLSFLRVQPWCSWQWWTKLVQKPYEQGDQRALKLVKGILRTLMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESEQDFYDALFLRAKVQFEQYVAQGKVLNHYANILDLLMQLRRCCNHPFLVMSGSDTAKYADLSRLARKFLESHTESSDMCCESDAPQNAELNKLASNFLQNSASASNSIQSRGYIDEVLGHIQKGETVECAICMESPDDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQILKKNDLIVLPSESPFKVDIENNLTESSKVSKLFDFLEHSQKYPDEKSIVFSQWTSFFDLLENPLRRRGIGFLRFDGKLTQKQREKVLKEFNETKEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKQRVTVRRFIVKGTVEDRLQQVQAKKQKMISGALTDDEVRTSRIQDLKMLFS 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01535 1139 SMART ring_2 903 942 IPR001841 -
Mepo4g01535 1139 Coils Coil 101 121 - -
Mepo4g01535 1139 Gene3D - 760 1139 IPR027417 -
Mepo4g01535 1139 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 973 1135 IPR001650 -
Mepo4g01535 1139 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 512 706 IPR014001 -
Mepo4g01535 1139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 848 967 IPR013083 -
Mepo4g01535 1139 Pfam HIRAN domain 251 330 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mepo4g01535 1139 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 272 1138 - -
Mepo4g01535 1139 ProSitePatterns Zinc finger RING-type signature. 918 927 IPR017907 -
Mepo4g01535 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 757 1130 IPR027417 -
Mepo4g01535 1139 CDD DEXDc_SHPRH-like 456 744 - -
Mepo4g01535 1139 Pfam Zinc finger, C3HC4 type (RING finger) 901 945 - -
Mepo4g01535 1139 CDD RING-HC 902 942 - -
Mepo4g01535 1139 Gene3D - 510 756 IPR038718 -
Mepo4g01535 1139 Pfam Helicase conserved C-terminal domain 973 1086 IPR001650 -
Mepo4g01535 1139 ProSiteProfiles Zinc finger RING-type profile. 903 943 IPR001841 -
Mepo4g01535 1139 FunFam DNA repair protein RAD5B 509 745 - -
Mepo4g01535 1139 SMART ultradead3 452 725 IPR014001 -
Mepo4g01535 1139 Pfam SNF2-related domain 459 822 IPR000330 GO:0005524|GO:0140658
Mepo4g01535 1139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 744 IPR027417 -
Mepo4g01535 1139 SUPERFAMILY RING/U-box 899 952 - -
Mepo4g01535 1139 SMART helicmild6 1003 1086 IPR001650 -
Mepo4g01535 1139 CDD SF2_C_SNF 959 1097 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01535 Mepo-Chr4 20250574 20256912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01535 210 1138 RAD5 or RAD16-like Gene Family AT5G43530 59.701 0.0 1153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo4g01535 SNF2_N 6.1e-81 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01535 K15505 - gmx:100806677 1447.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01535 4 20250574 20256912 Mepo4g01535 4 20250574 20256912 ECH