Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01524 ATGGGTTTTGTTATCAAACAACACTTGATCTATCATGTGTCACAAGCTCATCCACCTACCCAAAATCATCTTGATTGTGGTACAAATTTTCCAATAGTAATCATTGTAGTGGGAATGATGGCAACATCTTTCTTGCTAATGGCCTACTACACCTTTGTGATCAAATGCTGCTTCAATTGGAACAATATTGATCTTGTTAGAGGAAGACGTTTTTCTTTTTCAAGACAACATGAAGAACAATCTGCATCATACTCAATGACATCGGAGCATAGAGGATTAGAACAATCGGTGATTGATTCAATTCCAGTGATTCATTACAAATCAGAGAAAGACTACGGTGAATTAGGAATCTCTAGTGAATGTGCTTTTTGTTTGAGTGAGTTTCAAGAAGATGAGAAACTAAGAGTTATACCAAATTGCAACCATTTATTTCACATTGATTGTGTTGATGTTTGGCTTCAAAACAATGCAAATTGTCCACTTTGTAGAAGAAAAGTTTCAATGACTAGAGAAATCCAAGTTGAGCATGTTGTAACTCCAAGACCTTCACCTTATTTTGAAAGGCAAAATGTTGAAAACATCATTGATGGTTGTGAAGATTTTGTTGTAATTGATTTGGATAATGATGAAAATGATCATGAAGGTCAAAACTTGCATGAAAGAAAAGAAGAAAGAGGTAAAGAATTGGAAATACCAAGAGATTCACACAAGAAAGCAATTAAGCTTCAAAAAGTAAATAGCATGGGGGATGGGTGTATTAAAGGCAAAGATGATGGCTTTCTAGTTCAACCAATTAGAAGGTCTTTCTCAATGGACTTAGCAATACATAAATCTTTATATCAACCTAATTTGCATGTTCATGAGGTTAGTTCCATTGAAGTTTGTGGTGATAGTAGTAGTAGACCTAAAAGATCATTCTTTTCCTTTGGACATGGAAGTAGATCAAGAAGTGTTGTTTTACCAATTCATTTGAACCCTTGA 981 0.3445 MGFVIKQHLIYHVSQAHPPTQNHLDCGTNFPIVIIVVGMMATSFLLMAYYTFVIKCCFNWNNIDLVRGRRFSFSRQHEEQSASYSMTSEHRGLEQSVIDSIPVIHYKSEKDYGELGISSECAFCLSEFQEDEKLRVIPNCNHLFHIDCVDVWLQNNANCPLCRRKVSMTREIQVEHVVTPRPSPYFERQNVENIIDGCEDFVVIDLDNDENDHEGQNLHERKEERGKELEIPRDSHKKAIKLQKVNSMGDGCIKGKDDGFLVQPIRRSFSMDLAIHKSLYQPNLHVHEVSSIEVCGDSSSRPKRSFFSFGHGSRSRSVVLPIHLNP 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01524 326 CDD RING-H2_EL5-like 120 163 - -
Mepo4g01524 326 Pfam Ring finger domain 120 163 IPR001841 -
Mepo4g01524 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 169 IPR013083 -
Mepo4g01524 326 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Mepo4g01524 326 SUPERFAMILY RING/U-box 97 171 - -
Mepo4g01524 326 PANTHER RING-H2 FINGER PROTEIN ATL16 15 322 IPR044600 GO:0016567|GO:0016740
Mepo4g01524 326 SMART ring_2 121 162 IPR001841 -
Mepo4g01524 326 FunFam E3 ubiquitin-protein ligase ATL6 81 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01524 Mepo-Chr4 20127949 20129298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01524 27 326 C3H Transcription Factor Family AT1G04360 41.761 4.35e-65 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01524 - - psat:127097049 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03112 3 41236670 41237910 Mepo4g01524 4 20127949 20129298 PCT