Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01500 ATGAAAACTCTATGCAGATCATGGCCTATCCCCAGGCCACATGCAAGACTGCATATACTGGCCAGGAGTGGTGCATTTGGTGGCCCTGTTGATGATGACGAGAGGACGGCCGGTGTTTATGGTGTTGATGACAGTGCTCCAGCTATTTTCCAGCTATTTTCTAAGAATGATGGAATGGCAGATCCTGATTGTTATGGGAATTCTGAACGTGATATTGAACAAGCATTCATTACATTAAAAAGAGGAACCCAGTTAGTTAAGTATAGTCGACAAGGGAAGCCAAAACTTTGTAATTTCAGGCTGTCACAGGATGAAACATCACTAATTTGGATTTCTCATGGAAAGGAAAAGAATCTGAAGTTGTCTTCGGTTTTGCGCATCATCTCAGGACAGAGAACAGCTGTATTTAGAAGATATTTGCGCCCTGAAAAGGATTATCTATCATTTTCACTTATTTATAAAAAAGGCGAACGATCGCTTGATCTGATCTGCAAGGATACAACTGAGGTTGAGGTATGGTTTTCGGGCCTTAAGGCATTAATTTCTACTGGACAGCTTAGAAATCGGCGAACTAGAAGTGATTTAACAGATGATAGTGTTGACATTTCTCCGAATGATCGTCCTTTTGGCGGAGCACTAGAGTTTACTGCAGGTATTTCCAAGGGAAGGCTTTCTTTTGAATCAGTTCCTCGTGAATCCACATCGAATAGAAGATCTGATGCGGGGTCAGATCATACAAGTATGGCGCCAGTAAGGACAAGTGTTGGAGATGGTTCCCGTGTTAGTGTATCAAGTACTAACTATGCTAGTAGTGTAGTATCAGGACCAGATGACATAGAGTCTCTTGGTGATGTTTTTATATGGGGAGAGGTTTGGGCCGAAGGCAATTCCTCCGATGGATTAGGGAGTCGAGTCCCTTCCAAGACAGACATGTTGATTCCCAAGCCATTGGAATCTGATGTTGTTCTTGATGTTAATTATATAGAACCCGGTGTAAGTCACATTGCTCTAGTAACAAGGCAAGGTGAGCTTTTTACCTGGGGAGAGGACTCTGGTGGAAGACTCGGTCATGGGTTTGAAAAAGATTATGGTAAACCCCGTCTTGTTGATTCCCTAGCCATTACTAGTGTGAGTTTTGTTGCTTGTGGTGAATATCATACATGTGCGGTATCTATATCCGGGGATCTATACACCTGGGGTGATGGTACACATAACGCGGGAATTCTAGGTCATGGAACTGATGTTAGCCACTGCATACCAAAGAGGGTCACTGGCCCTTTAGAAGGACACCAGGTTGTATCTATAGCATGTGGCGCATGGCATACGGCATTGATAACTTCGAATGGGAAACTTTTTACCTTTGGTGATGGAACGCTTGGTGTCTTGGGGCATGGAGACAGAGAGAGTGTGGCATATCCAAAGGAGTTACAGTTATTGAGTGGACATAAAGCTGTTAAGGTTGCATGTGGAGTGTGGCACACAGCAGCAATTATAGAGTTTAATGATCAATCTGGTTTAAGTTCAAATACTTCTTCGTCAAAGAAACTATTCACGTGGGGTGATGGAGACCAATATCGTTTAGGTCATGCTAACAAGGAAACATACCTTCAACCAACTTGTGTGGCTGCACTTGCTGATTATAATTTTCAACAGGTTGCATGTGGACATAGTTTAACCGTTGTGCTAACCGCATCCGGTCATGTTTTTACTATGGGGAGCAAGGCGTATGGTCAACTAGGAAATCCAGCCTCCGATGGAAAAGTGCCGATTCTAGTAAGAGATAAATTACAAGGAGAATCTGTTGAGGAAATATCGTGCGGCACACATCATGTCGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGATTGGGGCATGGAGACATAGAAGATCAGAAAACTCCAATATTGGTGGAAGCTTTGAAAGAAAGGCATGTAAAAAATATCGCATGTGGCGCAAATTTTACAACTTGTATATGCATACATAAGTGGGTTTCAGGGAATGATCAATCGGTTTGCTCCGGTTGTAGACAGCCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATCATTGTGGATTGGTGTATTGCCATCCTTGTAGTTCAAAAAAGGCGCTGAAAGCAGCATTGGCTCCAACGCCTAGCAAACCGCATCGTGTTTGTGATGCTTGTTATGCTAAACTGAAAGGTTCCGAGAGTAGTAATGCTTCCCATTTCAATAAAGAAATTACCCGTCCTTCTAGTTCCGTGTATGGAAGGGAAAAAATTGATAGGGTTGAGGTAAGACCTTCAAAATTTCTCCTGTCTTCTACCACAGGTCTAGTGAAATCCCTTGGCAGTACACATGAATCATCTTCCATGGCTGGAGACGCGTTACAATTGAAAGATATCATATTTCCTGGTCCATCAAGTGCAACGCAGAGTGCTTCCAGGGCTCTTATTATGCAGCAAAGCCAGGCTCCAACTCCACCTTCATCAGCTAATTCAAGACCACCCTCGCCGTATTCTAGAAGACCGCCTAGCCCGACACGGTCTGTCTCCCCAGGATTTTCAAGAAGTCTTATTGAGAGTTTAAAGAAGAAAAATGAGCATCTGAATCAAGAAGTCTCAAAGTTGCAGAACAATATTCGAGGTTTAAAGCAAAAGGGTGACATGCAAGATATAAAGATTCGGGAACTTCAAAAAAATATTGAGGAAGCCAATCTATTGGCAGGAGAGGAATCTTCTAAGCATAGAGAAGCAAAGGAATTCATCAAGTCTATAACAGAAGAGTTGTGCGAAGTGACTGAAAAGTTGCCACCAGAGATTCCTGGCAGTGAAACCTTGAAAGTGATCCATGCTCAAGCACAAAATATTCTCAAAGAAAATTTAGAATTTGAATCTTCCTTCCAACCGAGTTTCGAGTCTGAGCAACAAAGAGCGCCTGATATACCAGCATCAGATAGTGACTCTTCAAACCTGCAAGAGCAAAGAATGGATGGAAACAATGAAGTTTCTGAGGTTGTTCCATCAACAAATGGAGGAGATGATCGTCAAGAAAGAAGCAGCAGCTCGTATTTATCAACTAATGCAGTCTCTCCACGAAACTCGGAAAATAATATCAGATCACAGGAGTCGTCCAGGCCTGTGAGAGAAGGAGAAACGTCGGTCATTGAACAATTTGAACGCGGTGTTTATATCACAGCCATAGTAATACCTGATGGCAGCAAATTTTTCAAACGTGTTAGATTCAGTAGGAGAAGATTCAGTGAGCAACAAGCAGAAGAATGGTGGAGCAATAACAAAGATAGGGTATATAGAAGATATAACCCACCACCTATAAATAATGAAAGTATTGGTTCATCTAGCACCCCACCTCATGGTGAAGAAAATGTTGAAGCAGCCTCAATCAACCAAGTGTAG 3423 0.4233 MKTLCRSWPIPRPHARLHILARSGAFGGPVDDDERTAGVYGVDDSAPAIFQLFSKNDGMADPDCYGNSERDIEQAFITLKRGTQLVKYSRQGKPKLCNFRLSQDETSLIWISHGKEKNLKLSSVLRIISGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDTTEVEVWFSGLKALISTGQLRNRRTRSDLTDDSVDISPNDRPFGGALEFTAGISKGRLSFESVPRESTSNRRSDAGSDHTSMAPVRTSVGDGSRVSVSSTNYASSVVSGPDDIESLGDVFIWGEVWAEGNSSDGLGSRVPSKTDMLIPKPLESDVVLDVNYIEPGVSHIALVTRQGELFTWGEDSGGRLGHGFEKDYGKPRLVDSLAITSVSFVACGEYHTCAVSISGDLYTWGDGTHNAGILGHGTDVSHCIPKRVTGPLEGHQVVSIACGAWHTALITSNGKLFTFGDGTLGVLGHGDRESVAYPKELQLLSGHKAVKVACGVWHTAAIIEFNDQSGLSSNTSSSKKLFTWGDGDQYRLGHANKETYLQPTCVAALADYNFQQVACGHSLTVVLTASGHVFTMGSKAYGQLGNPASDGKVPILVRDKLQGESVEEISCGTHHVAVLTSRSELYTWGRGANGRLGHGDIEDQKTPILVEALKERHVKNIACGANFTTCICIHKWVSGNDQSVCSGCRQPFGFTRKRHNCYHCGLVYCHPCSSKKALKAALAPTPSKPHRVCDACYAKLKGSESSNASHFNKEITRPSSSVYGREKIDRVEVRPSKFLLSSTTGLVKSLGSTHESSSMAGDALQLKDIIFPGPSSATQSASRALIMQQSQAPTPPSSANSRPPSPYSRRPPSPTRSVSPGFSRSLIESLKKKNEHLNQEVSKLQNNIRGLKQKGDMQDIKIRELQKNIEEANLLAGEESSKHREAKEFIKSITEELCEVTEKLPPEIPGSETLKVIHAQAQNILKENLEFESSFQPSFESEQQRAPDIPASDSDSSNLQEQRMDGNNEVSEVVPSTNGGDDRQERSSSSYLSTNAVSPRNSENNIRSQESSRPVREGETSVIEQFERGVYITAIVIPDGSKFFKRVRFSRRRFSEQQAEEWWSNNKDRVYRRYNPPPINNESIGSSSTPPHGEENVEAASINQV 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01500 1140 Pfam Transcription factor BRX N-terminal domain 913 943 IPR027988 -
Mepo4g01500 1140 MobiDBLite consensus disorder prediction 240 260 - -
Mepo4g01500 1140 MobiDBLite consensus disorder prediction 810 858 - -
Mepo4g01500 1140 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 115 938 - -
Mepo4g01500 1140 Pfam Transcription factor regulating root and shoot growth via Pin3 1055 1109 IPR013591 -
Mepo4g01500 1140 FunFam PH, RCC1 and FYVE domains-containing protein 1 254 501 - -
Mepo4g01500 1140 PRINTS Chromosome condensation regulator RCC1 signature 344 360 IPR000408 -
Mepo4g01500 1140 PRINTS Chromosome condensation regulator RCC1 signature 394 410 IPR000408 -
Mepo4g01500 1140 PRINTS Chromosome condensation regulator RCC1 signature 555 573 IPR000408 -
Mepo4g01500 1140 PRINTS Chromosome condensation regulator RCC1 signature 451 465 IPR000408 -
Mepo4g01500 1140 PRINTS Chromosome condensation regulator RCC1 signature 613 634 IPR000408 -
Mepo4g01500 1140 PRINTS Chromosome condensation regulator RCC1 signature 435 451 IPR000408 -
Mepo4g01500 1140 SUPERFAMILY FYVE/PHD zinc finger 670 745 IPR011011 -
Mepo4g01500 1140 Gene3D - 236 510 IPR009091 -
Mepo4g01500 1140 MobiDBLite consensus disorder prediction 1112 1140 - -
Mepo4g01500 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 342 390 IPR000408 -
Mepo4g01500 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 619 666 IPR000408 -
Mepo4g01500 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 565 614 IPR000408 -
Mepo4g01500 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 516 562 IPR000408 -
Mepo4g01500 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 393 445 IPR000408 -
Mepo4g01500 1140 Pfam Regulator of chromosome condensation (RCC1) repeat 448 497 IPR000408 -
Mepo4g01500 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 394 448 IPR000408 -
Mepo4g01500 1140 MobiDBLite consensus disorder prediction 832 848 - -
Mepo4g01500 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 618 669 IPR000408 -
Mepo4g01500 1140 Coils Coil 897 917 - -
Mepo4g01500 1140 MobiDBLite consensus disorder prediction 969 1053 - -
Mepo4g01500 1140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 683 742 IPR013083 -
Mepo4g01500 1140 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 435 445 IPR000408 -
Mepo4g01500 1140 ProSiteProfiles BRX domain profile. 1055 1110 IPR013591 -
Mepo4g01500 1140 Gene3D - 511 682 IPR009091 -
Mepo4g01500 1140 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 674 736 IPR017455 -
Mepo4g01500 1140 MobiDBLite consensus disorder prediction 810 831 - -
Mepo4g01500 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 342 393 IPR000408 -
Mepo4g01500 1140 MobiDBLite consensus disorder prediction 226 260 - -
Mepo4g01500 1140 Pfam Pleckstrin homology domain 73 181 IPR001849 -
Mepo4g01500 1140 SUPERFAMILY PH domain-like 72 181 - -
Mepo4g01500 1140 SUPERFAMILY RCC1/BLIP-II 283 671 IPR009091 -
Mepo4g01500 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 514 565 IPR000408 -
Mepo4g01500 1140 Pfam FYVE zinc finger 670 735 IPR000306 GO:0046872
Mepo4g01500 1140 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 487 497 IPR000408 -
Mepo4g01500 1140 MobiDBLite consensus disorder prediction 969 1055 - -
Mepo4g01500 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 449 500 IPR000408 -
Mepo4g01500 1140 Coils Coil 862 889 - -
Mepo4g01500 1140 CDD PH_PLC_plant-like 70 182 - -
Mepo4g01500 1140 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 566 617 IPR000408 -
Mepo4g01500 1140 Gene3D - 71 190 IPR011993 -
Mepo4g01500 1140 SMART fyve_4 668 737 IPR000306 GO:0046872
Mepo4g01500 1140 MobiDBLite consensus disorder prediction 1114 1140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01500 Mepo-Chr4 19870980 19885197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01500 1052 1119 Major Intrinsic Protein MIP AT1G31880 36.765 1.48e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01500 - - mtr:11430388 1850.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01500 4 19870980 19885197 Mepo4g01500 4 19870980 19885197 ECH