Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01489 ATGTCTTCTAATGAACCTGATCATGGTGTCCACTTTTTCAAGATTATTCTTGAAAGTACCCTTCAAGAAGGAAAACTGAGAGTTCCCGCAAGTTTTGTGAGAAGACATTGGCAAGGAATAACAAACCCAGTTACTCTTAGACTTCCTAATACTGCAGAAAAGAATGTTTTTTGGGAGAAAACTAGTGATTATGATGTTTGGTTTTGCAATGGTTGGAAAGAATTTGCTAATTATGTGTCTCTGAGTGATTCACAACTTTTGGTGTTTAAATTTAATGAAAATTCTCTTTTCAATGTGATTGTACTCCGTAAATGTGGATTAGAGATAAAATACCCTTCAAGAGAAATTAGCGAAGAATCTGAAGAAGTTGAAGAGAGCGATAGTTCTCTTAAAGTTGTTGATGATCCCTCATCTTCGCGAGGCAAAAGACCAAAATCTTCATCACCGTCTTCAAAAGTTTATAAGAAGATGAAAATCAACCCAAAAGAGCATAAAGAATCTAACTTTGAGAAGAGAAAAGTCCAAGCACATGCAACATTTCATGATTTTAAGGATATTGACAATGGAAGAACTAGTTTCGTTGATCTTAAGATGAGAAGCATAGAGTTGTACGAGAAAGTGGAGCAAAAATTCTACCCTGATAATGATTTCTTCGCATGTATGATGCAAAAGGCATACATGGAAAATGATCTCTTGGTCATACCAAATAATTTTGCTATGAGGCATCTGCAAAGCATGGAAGGAAGAAGAGTTATGCTTTTTGATGACAAAGATAGAAAATGGGATGTTAATTTGAAACTCACTCCAACTAAACAATTCAGAATAAATGGTGGTTGGAGTAAATTCCGTGCTGACCATAATGCTCCTGAATCCTGA 876 0.3539 MSSNEPDHGVHFFKIILESTLQEGKLRVPASFVRRHWQGITNPVTLRLPNTAEKNVFWEKTSDYDVWFCNGWKEFANYVSLSDSQLLVFKFNENSLFNVIVLRKCGLEIKYPSREISEESEEVEESDSSLKVVDDPSSSRGKRPKSSSPSSKVYKKMKINPKEHKESNFEKRKVQAHATFHDFKDIDNGRTSFVDLKMRSIELYEKVEQKFYPDNDFFACMMQKAYMENDLLVIPNNFAMRHLQSMEGRRVMLFDDKDRKWDVNLKLTPTKQFRINGGWSKFRADHNAPES 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01489 291 Pfam B3 DNA binding domain 217 287 IPR003340 GO:0003677
Mepo4g01489 291 Gene3D - 197 290 IPR015300 -
Mepo4g01489 291 SUPERFAMILY DNA-binding pseudobarrel domain 213 287 IPR015300 -
Mepo4g01489 291 CDD B3_DNA 11 103 IPR003340 GO:0003677
Mepo4g01489 291 CDD B3_DNA 217 287 IPR003340 GO:0003677
Mepo4g01489 291 MobiDBLite consensus disorder prediction 118 157 - -
Mepo4g01489 291 SUPERFAMILY DNA-binding pseudobarrel domain 10 104 IPR015300 -
Mepo4g01489 291 Gene3D - 5 105 IPR015300 -
Mepo4g01489 291 SMART B3_2 12 108 IPR003340 GO:0003677
Mepo4g01489 291 MobiDBLite consensus disorder prediction 126 141 - -
Mepo4g01489 291 ProSiteProfiles B3 DNA-binding domain profile. 11 105 IPR003340 GO:0003677
Mepo4g01489 291 PANTHER B3 DOMAIN-CONTAINING 7 287 - -
Mepo4g01489 291 ProSiteProfiles B3 DNA-binding domain profile. 217 291 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01489 Mepo-Chr4 19723791 19727371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01489 12 291 B3 DNA Binding Superfamily AT3G18990 25.312 1.65e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g01489 B3 1.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01489 - - tpra:123894507 340.117