Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01469 ATGTTGGTGGGTTTATTGGAAGAGAAAAAGAATAGAATGGTGAGAGGAAAGATTGAGATTAAGAAGATTGAGAATTTGAATTACAGGAAAGTTACATTTTCAAAAAGACGCAATGGTTTGATCAAGAAAGCTCAAGAATTGTCTATTCTTTGTGATGCCGAGGTTGCTGTTATCGTATTCTCTGCTACCGGCAAGCTTTATGAGTTTTCCAGCACAAGACGCACCTTAGACTTCTTTTTTAATTTCTCTGATGATTTCATTGGTTTTTCGAAATTTATTGATATGCAGGATCAAGAAGCTATGGCGGAGATCAAAGCTTTGCGTAAACAACTTGAGGAGATAGAAAATAAAAGCAAGGTAGAGTTCAAAGAAATTGATCCGTTGGATAGAGGTACAGCTTCCATCAACAGTTCAAACCCCCCGTTGGAACCCTACTTGCAGTTAAGGACCATTGAAGCTTCTACAGAGTTGAACAACAAAGATGTGATTGAGGAAAGTCAAAATGAACACAATCATGATCTATTTGTCCCTATAAGAAAGGGAGTGCACCTGATTTCAAAATCTTTCAATTCTGAGACCGCTGTATATGGATCAGACTTGTGTGAATTGAAGGAGTGCTTATAA 624 0.375 MLVGLLEEKKNRMVRGKIEIKKIENLNYRKVTFSKRRNGLIKKAQELSILCDAEVAVIVFSATGKLYEFSSTRRTLDFFFNFSDDFIGFSKFIDMQDQEAMAEIKALRKQLEEIENKSKVEFKEIDPLDRGTASINSSNPPLEPYLQLRTIEASTELNNKDVIEESQNEHNHDLFVPIRKGVHLISKSFNSETAVYGSDLCELKECL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01469 207 CDD MADS_MEF2_like 15 72 IPR033896 GO:0000977|GO:0045944
Mepo4g01469 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 15 128 - -
Mepo4g01469 207 SUPERFAMILY SRF-like 15 78 IPR036879 GO:0003677|GO:0046983
Mepo4g01469 207 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Mepo4g01469 207 ProSitePatterns MADS-box domain signature. 15 69 IPR002100 GO:0003677|GO:0046983
Mepo4g01469 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
Mepo4g01469 207 Coils Coil 97 124 - -
Mepo4g01469 207 Coils Coil 6 26 - -
Mepo4g01469 207 Gene3D - 25 80 IPR036879 GO:0003677|GO:0046983
Mepo4g01469 207 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Mepo4g01469 207 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Mepo4g01469 207 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Mepo4g01469 207 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01469 Mepo-Chr4 19490992 19495854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01469 13 128 MADS-box Gene Family AT5G13790 51.261 1.96e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo4g01469 SRF-TF 5.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01469 - K09264 dct:110098137 109.768